Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p09
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    28   1.3  
SPAC18G6.06 |||U3 snoRNP-associated protein Utp11|Schizosaccharo...    27   3.1  
SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    26   5.4  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   7.1  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   9.4  
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ...    25   9.4  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   9.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 471 AQPKTFSLRSLFT--KDAEQDEAPQQETEYIPLDVPKKKKGNP 349
           A+P T SL +  +  KD++   APQ  T+ + L  P++K  +P
Sbjct: 253 ARPLTMSLYTNTSEEKDSQPTRAPQSPTKPVLLTAPRRKNKSP 295


>SPAC18G6.06 |||U3 snoRNP-associated protein
           Utp11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -2

Query: 177 KFFNTTGDTEGQKDRRELKSLMKRRIYNKERKNQMFHKKIGGRRK 43
           +FF TT D  G+ + R    + K +I N E  NQ F  K+  + K
Sbjct: 153 EFFQTTDDLVGRTENR----VKKDQIENNELTNQPFSGKLHSKLK 193


>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 437 SLKMQNKMKHLNKKQNIYHLMFQ 369
           S K++ +M HL KK N+Y   F+
Sbjct: 128 SRKLEEEMAHLKKKCNVYKSKFE 150


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 492 ETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETEYI 385
           ET +ET+ +    SLR L +  ++  + P+ +T Y+
Sbjct: 203 ETKEETLVEVSGRSLRKLLSSSSKNPKEPRLQTIYL 238


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = -2

Query: 492 ETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETEYIPLDVPKKKKGNPLDPGEK 331
           ++L + I+  K  S  +  T+DA    A + ETE   LD   + K  P  P E+
Sbjct: 433 KSLLQEISSQKQLSTDASQTQDASI--ANENETEIASLDEGSESKPTPSPPAEQ 484


>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/28 (53%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -2

Query: 474 IAQPKT-FSLRSLFTKDAEQDEAPQQET 394
           I+QP T FS  S F K A Q+E PQQ +
Sbjct: 586 ISQPNTGFSFGS-FNKPAGQEEKPQQRS 612


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 717 VRNQSQNLGMLRFDPLQPSHAKFLMQQAEDV 625
           +R  S  LG++  DPL  SHA+  MQ  E +
Sbjct: 544 IRIISGPLGLVHPDPLVASHARSSMQTIESL 574


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,338
Number of Sequences: 5004
Number of extensions: 36254
Number of successful extensions: 112
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)