Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p09
         (790 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028363-1|AAH28363.1|  931|Homo sapiens phosphatidylinositol gl...    31   6.3  
AL137607-1|CAB70839.1|  825|Homo sapiens hypothetical protein pr...    31   6.3  
AF109219-1|AAD11432.1|  931|Homo sapiens Mcd4p homolog protein.        31   6.3  

>BC028363-1|AAH28363.1|  931|Homo sapiens phosphatidylinositol
           glycan anchor biosynthesis, class N protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 513 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 668
           P  LL CS V +  ++ +F    ACP++++ Y L  +   +  L   +++ DLV
Sbjct: 480 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 533


>AL137607-1|CAB70839.1|  825|Homo sapiens hypothetical protein
           protein.
          Length = 825

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 513 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 668
           P  LL CS V +  ++ +F    ACP++++ Y L  +   +  L   +++ DLV
Sbjct: 374 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 427


>AF109219-1|AAD11432.1|  931|Homo sapiens Mcd4p homolog protein.
          Length = 931

 Score = 30.7 bits (66), Expect = 6.3
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 513 PWTLLSCSLVIVLNVLVYFDSHSACPFSFFFYSL--VQFLHLRLAALKILHDLV 668
           P  LL CS V +  ++ +F    ACP++++ Y L  +   +  L   +++ DLV
Sbjct: 480 PSHLLPCSFVAIGILVAFFLLIQACPWTYYVYGLLPLPIWYAVLREFQVIQDLV 533


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,860,515
Number of Sequences: 237096
Number of extensions: 1128327
Number of successful extensions: 3147
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3139
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9646050614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)