Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p09
(790 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-2921|AAF49010.2| 580|Drosophila melanogaster CG14230-P... 42 0.001
AY069192-1|AAL39337.1| 734|Drosophila melanogaster GH24787p pro... 31 1.8
AE014296-1465|AAF50409.1| 734|Drosophila melanogaster CG6745-PA... 31 1.8
AY095086-1|AAM11414.1| 330|Drosophila melanogaster RE56341p pro... 30 4.1
AY075545-1|AAL68352.1| 384|Drosophila melanogaster RH43215p pro... 30 4.1
AE014296-2391|AAF49733.1| 330|Drosophila melanogaster CG9238-PA... 30 4.1
AE014296-2390|AAF49732.1| 384|Drosophila melanogaster CG9238-PB... 30 4.1
BT001724-1|AAN71479.1| 568|Drosophila melanogaster RE69557p pro... 29 7.2
AE014296-3637|AAF51793.2| 568|Drosophila melanogaster CG7442-PA... 29 7.2
AY089617-1|AAL90355.1| 958|Drosophila melanogaster RE32881p pro... 29 9.6
AF267746-1|AAF82099.1| 715|Drosophila melanogaster rad21 mitoti... 29 9.6
AF186473-1|AAF01417.1| 715|Drosophila melanogaster mitotic cohe... 29 9.6
AF132146-1|AAD33593.1| 715|Drosophila melanogaster DNA repair p... 29 9.6
AF109926-1|AAD04175.1| 715|Drosophila melanogaster rad21 mitoti... 29 9.6
AE014298-1748|AAF48140.5| 1040|Drosophila melanogaster CG32656-P... 29 9.6
>AE014298-2921|AAF49010.2| 580|Drosophila melanogaster CG14230-PA
protein.
Length = 580
Score = 41.5 bits (93), Expect = 0.001
Identities = 58/227 (25%), Positives = 90/227 (39%), Gaps = 20/227 (8%)
Frame = -2
Query: 702 QNLGMLRFDPLQPSHAKFLMQQAEDVKTEPVXXXXXXXXXXXXXXXKQEHLEQSQENKIE 523
+N MLRFDP + H K LM+Q + + E K + +
Sbjct: 343 KNKKMLRFDPAKEGHQK-LMRQKQPKEEEE--------KKEETSSTKAKTADAGNSQASA 393
Query: 522 VSKETFYKVSETLKETI-AQPKTFSLRSLFTKDAEQDEAPQQ-ETEYIPLD--VPKKKKG 355
VSK FY V++TL++++ + + FSL +F E++ A +Q + E + + + K
Sbjct: 394 VSKTAFYIVTDTLRDSLNTRGEGFSLLDMFGSAPEKEVAKRQDQLEKLGHEKILVGKTSA 453
Query: 354 NPLDPGEKNPFIYD----XXXXXXXXXXXXXXXXSLPVPTEAKAV------------WKE 223
N L NPF YD L V E KA E
Sbjct: 454 NKLGLATLNPFSYDSSDSEDETEVKPKQEQEQEQELEVSKENKAQPAKKSGQKRNKNKLE 513
Query: 222 NLFFTKQDQRLLDGLKFFNTTGDTEGQKDRRELKSLMKRRIYNKERK 82
+ F + D RL +G KFF +T + ++K+ +K I K K
Sbjct: 514 SFFIPRNDPRLKEGAKFFKSTKAVVDHAEYDQVKNRLKLLITKKIAK 560
>AY069192-1|AAL39337.1| 734|Drosophila melanogaster GH24787p
protein.
Length = 734
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 552 LEQSQENKIEVSKETFYK---VSETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETEYIP 382
L++ Q ++ + YK +S T+ + A+PK SL KDA + E Q+ +P
Sbjct: 151 LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGETSTQKDSQVP 210
Query: 381 LDVPKKKKGNPLDPG 337
+ K K PG
Sbjct: 211 AEEKKTIKVFKPKPG 225
>AE014296-1465|AAF50409.1| 734|Drosophila melanogaster CG6745-PA
protein.
Length = 734
Score = 31.1 bits (67), Expect = 1.8
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 552 LEQSQENKIEVSKETFYK---VSETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETEYIP 382
L++ Q ++ + YK +S T+ + A+PK SL KDA + E Q+ +P
Sbjct: 151 LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGETSTQKDSQVP 210
Query: 381 LDVPKKKKGNPLDPG 337
+ K K PG
Sbjct: 211 AEEKKTIKVFKPKPG 225
>AY095086-1|AAM11414.1| 330|Drosophila melanogaster RE56341p
protein.
Length = 330
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 238 SCLERKSILHKARSTTA 188
SCL RKS LHK+++TTA
Sbjct: 50 SCLSRKSCLHKSQNTTA 66
>AY075545-1|AAL68352.1| 384|Drosophila melanogaster RH43215p
protein.
Length = 384
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 238 SCLERKSILHKARSTTA 188
SCL RKS LHK+++TTA
Sbjct: 104 SCLSRKSCLHKSQNTTA 120
>AE014296-2391|AAF49733.1| 330|Drosophila melanogaster CG9238-PA,
isoform A protein.
Length = 330
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 238 SCLERKSILHKARSTTA 188
SCL RKS LHK+++TTA
Sbjct: 50 SCLSRKSCLHKSQNTTA 66
>AE014296-2390|AAF49732.1| 384|Drosophila melanogaster CG9238-PB,
isoform B protein.
Length = 384
Score = 29.9 bits (64), Expect = 4.1
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 238 SCLERKSILHKARSTTA 188
SCL RKS LHK+++TTA
Sbjct: 104 SCLSRKSCLHKSQNTTA 120
>BT001724-1|AAN71479.1| 568|Drosophila melanogaster RE69557p
protein.
Length = 568
Score = 29.1 bits (62), Expect = 7.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 501 YRRFPWTLLSCSLVIVLNVLVYF 569
++ F W + +CSL +++VLVY+
Sbjct: 357 FKNFKWRIANCSLCWIVHVLVYY 379
>AE014296-3637|AAF51793.2| 568|Drosophila melanogaster CG7442-PA
protein.
Length = 568
Score = 29.1 bits (62), Expect = 7.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 501 YRRFPWTLLSCSLVIVLNVLVYF 569
++ F W + +CSL +++VLVY+
Sbjct: 357 FKNFKWRIANCSLCWIVHVLVYY 379
>AY089617-1|AAL90355.1| 958|Drosophila melanogaster RE32881p protein.
Length = 958
Score = 28.7 bits (61), Expect = 9.6
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 561 QEHLEQSQENKIEVSKETFYKVSETLKETIAQPKTFSLR----SLFTKDAEQDEAP--QQ 400
QE + S E K + SKE K S+ K+ ++ K + + KD + D+ P ++
Sbjct: 824 QEQKKPSSEEKEKDSKEKNDKDSKEKKDNDSKDKKDKSKEEKDNESQKDNDGDDEPSSKE 883
Query: 399 ETEYIPLDVPKKKKGNPLDPGEKNPFIYD 313
+ +Y+ + K KKG+ D + P + D
Sbjct: 884 KKQYVKDLIKKLKKGDECDEDDVYPDVRD 912
>AF267746-1|AAF82099.1| 715|Drosophila melanogaster rad21 mitotic
cohesin protein.
Length = 715
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 243 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 377
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AF186473-1|AAF01417.1| 715|Drosophila melanogaster mitotic cohesin
SCC1 protein.
Length = 715
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 243 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 377
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AF132146-1|AAD33593.1| 715|Drosophila melanogaster DNA repair
protein Rad21 protein.
Length = 715
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 243 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 377
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AF109926-1|AAD04175.1| 715|Drosophila melanogaster rad21 mitotic
cohesin protein.
Length = 715
Score = 28.7 bits (61), Expect = 9.6
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +3
Query: 243 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 377
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AE014298-1748|AAF48140.5| 1040|Drosophila melanogaster CG32656-PA
protein.
Length = 1040
Score = 28.7 bits (61), Expect = 9.6
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 561 QEHLEQSQENKIEVSKETFYKVSETLKETIAQPKTFSLR----SLFTKDAEQDEAP--QQ 400
QE + S E K + SKE K S+ K+ ++ K + + KD + D+ P ++
Sbjct: 906 QEQKKPSSEEKEKDSKEKNDKDSKEKKDNDSKDKKDKSKEEKDNESQKDNDGDDEPSSKE 965
Query: 399 ETEYIPLDVPKKKKGNPLDPGEKNPFIYD 313
+ +Y+ + K KKG+ D + P + D
Sbjct: 966 KKQYVKDLIKKLKKGDECDEDDVYPDVRD 994
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,263,367
Number of Sequences: 53049
Number of extensions: 362596
Number of successful extensions: 1455
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1455
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3654740856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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