Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p09
         (790 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical p...    29   3.8  
Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z79596-6|CAJ43438.1|  225|Caenorhabditis elegans Hypothetical pr...    28   8.8  
Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical pr...    28   8.8  
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    28   8.8  

>U53336-10|AAA96182.2|  125|Caenorhabditis elegans Hypothetical
           protein K07C11.10 protein.
          Length = 125

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = -2

Query: 561 QEHLEQSQENKIEVS---KETFYKVSETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETE 391
           QE +  SQ  K+E      E +    ETL     +PK   L+++ T+  E+ +  Q E  
Sbjct: 26  QERVVMSQGEKLEEKLFVDECYLFQDETLTPIFCKPKLIPLKTITTQKLEKMQREQMERL 85

Query: 390 YIP 382
            +P
Sbjct: 86  QVP 88


>Z81593-7|CAB63316.2|  400|Caenorhabditis elegans Hypothetical
           protein T20B3.13 protein.
          Length = 400

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -2

Query: 465 PKTFSLRSLFTKDAEQDEAPQQETEYIPLDVPKKKKGNPLDPGEK 331
           P+ +S+ S+  ++ E DE P + T     D PK +     +PG++
Sbjct: 34  PENYSIPSVSAEETEPDETPNERTIVDAYDPPKSE----FEPGDR 74


>Z79596-6|CAJ43438.1|  225|Caenorhabditis elegans Hypothetical
           protein C02C6.3b protein.
          Length = 225

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 534 NKIEVSKETFYKVSETLKETI--AQPKTFSLRSLFTKDAEQDE 412
           N I +S+  FY + +  +     AQP+TF LR+ F  D    E
Sbjct: 112 NTINLSRNQFYVIPKDFRALADKAQPETFLLRNQFYCDCNSKE 154


>Z79596-5|CAB01858.3|  369|Caenorhabditis elegans Hypothetical
           protein C02C6.3a protein.
          Length = 369

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 534 NKIEVSKETFYKVSETLKETI--AQPKTFSLRSLFTKDAEQDE 412
           N I +S+  FY + +  +     AQP+TF LR+ F  D    E
Sbjct: 256 NTINLSRNQFYVIPKDFRALADKAQPETFLLRNQFYCDCNSKE 298


>U42832-6|AAP40542.2|  342|Caenorhabditis elegans Hypothetical
           protein F01E11.5b protein.
          Length = 342

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 443 VCSLKMQNKMKHLNKKQNIYHLMFQRRKKGIL*TLEKR 330
           V ++  +   +H N+K+ IY    QR+ K I    E+R
Sbjct: 221 VMAISYEKVKRHKNRKERIYRKSLQRKPKAISAAKERR 258


>U42832-5|ABA03119.1|  468|Caenorhabditis elegans Hypothetical
           protein F01E11.5c protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 443 VCSLKMQNKMKHLNKKQNIYHLMFQRRKKGIL*TLEKR 330
           V ++  +   +H N+K+ IY    QR+ K I    E+R
Sbjct: 347 VMAISYEKVKRHKNRKERIYRKSLQRKPKAISAAKERR 384


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -3

Query: 443 VCSLKMQNKMKHLNKKQNIYHLMFQRRKKGIL*TLEKR 330
           V ++  +   +H N+K+ IY    QR+ K I    E+R
Sbjct: 341 VMAISYEKVKRHKNRKERIYRKSLQRKPKAISAAKERR 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,399,979
Number of Sequences: 27780
Number of extensions: 200482
Number of successful extensions: 684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)