Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p07
         (839 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    33   0.038
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    30   0.47 
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    29   1.1  
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ...    28   1.9  
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun...    27   3.3  
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   3.3  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   4.4  
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c...    26   5.8  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   5.8  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   5.8  
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    26   7.6  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    26   7.6  

>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 33.5 bits (73), Expect = 0.038
 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
 Frame = -2

Query: 715 RFKDQFESDQEDQSAIDDET--NELKSNVPQLSSNFKSKTVRFKPLVK--KKDEPSPADL 548
           R + Q ES+QE +S +D+      +++   ++ ++ KS +V  KP  K  K D P+P DL
Sbjct: 410 RRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL 469

Query: 547 GPVVNKMLYRSL 512
             +  K   RSL
Sbjct: 470 VNLSEKTSNRSL 481


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 21/74 (28%), Positives = 39/74 (52%)
 Frame = -2

Query: 721 ASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADLGP 542
           +S  +++ +S+   +S + DE +E  S +P+ S+  KS  +  K L  +KD  S   L P
Sbjct: 22  SSVVEEEPDSESTIKSRVSDEIDEHDS-IPEQSNTEKSIEINDKNLEAEKDIESNLSLRP 80

Query: 541 VVNKMLYRSLPLQQ 500
             + +  RS+  +Q
Sbjct: 81  PEDDLDSRSIESEQ 94


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = +2

Query: 275 FNTTTNDVSIRGRCSIYRYFE 337
           + TT +D  +RG C++Y+Y++
Sbjct: 167 YETTEDDYCLRGYCTVYKYYK 187


>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 932

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
 Frame = -2

Query: 340 RFKVPVDRTPAPNAYIVGGGIETILRSHNHRLKENTTSHQA---------LFSKEPAPFQ 188
           R  +PV   P P   I      T  R  N  LK NT   QA            ++ AP Q
Sbjct: 115 RATIPVKPEPQPQYKIPAAPAPTSKRVVNRGLKLNTNLRQASPILPSPSLKLDRQDAPIQ 174

Query: 187 LSLEERETLLIN 152
           ++ E++E  L++
Sbjct: 175 INHEQKEDFLVS 186


>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
           Taf7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 724 SASRFKDQFESDQEDQSAIDDETNELK 644
           SAS  +++ E ++E+++  DDET E K
Sbjct: 308 SASEEEEEEEEEEEEENEADDETRENK 334


>SPAC1952.17c ||SPAC890.01c|GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 655 NELKSNVPQLSSNFKSKTVRFKPLVKKK 572
           N +K+NVPQ SS++     + +PL +K+
Sbjct: 491 NTVKANVPQSSSSYTDNNKQKEPLEEKR 518


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 268  LRSHNHRLKENTTSHQALFSKEPAPFQLSLEERETLLINKSINLLSVDDNFQN 110
            LRS+  +   N+ S  ALFS   A F ++L E++     ++ NLL +   F N
Sbjct: 1574 LRSYARKTLTNSASQNALFSFLKANFDVALLEQKQ---TETSNLLRLAMGFHN 1623


>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 579

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +1

Query: 85  RIVILIIISFGNYRQH*VNLLIYLLE---VFHVLLMKAEMV 198
           + ++L+I+S GNY  +  NLL  + E   +  +++ KAE++
Sbjct: 102 KCLLLLILSLGNYSPYSRNLLYSIAEKLGLSSIVVYKAELI 142


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -2

Query: 733 FGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKS 608
           + S    F+D FE++Q D   ++  T   K N+ QL    K+
Sbjct: 60  YQSLFEEFQDCFENEQLDVEWVESVTFHRKQNLEQLRRELKA 101


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -2

Query: 415 PGYYDVTNYSK---KNIAVHHGPLSRSLRFKVPVDRTPAPNAYIVGGG 281
           P Y+  T Y     K I    G     L++++ V R P PNA+++ GG
Sbjct: 126 PSYHPTTLYVSRVLKRIIAVSG--MSDLKWELHVIRDPTPNAFVLPGG 171


>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 34  PPSFYCCNTFSLLLKGNRIVILII 105
           P  FY  N FS LLK  R+   I+
Sbjct: 43  PKKFYSVNAFSPLLKARRMTATIV 66


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -2

Query: 334 KVPVDRTPAPNAYIVGGGIETI--LRSHNHRLKEN 236
           KVP+D TP P   I+   + T+   RS  + + EN
Sbjct: 67  KVPIDTTPTPRDEILLENVRTVRKQRSSLYHISEN 101


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,468,879
Number of Sequences: 5004
Number of extensions: 72927
Number of successful extensions: 267
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)