Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p07
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0134 - 1127794-1127889,1128005-1128196,1128336-1128425,112...    31   1.1  
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950...    31   1.5  
06_02_0013 - 10581449-10585105                                         29   3.5  
06_03_0950 - 26266755-26266917,26267273-26267652,26267742-262679...    29   6.1  
02_04_0508 - 23550785-23551219,23551717-23552670                       29   6.1  
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336...    29   6.1  

>11_01_0134 -
           1127794-1127889,1128005-1128196,1128336-1128425,
           1128640-1128693
          Length = 143

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -2

Query: 340 RFKVPVDRTPAPNAYIVGGGIETILRSHNHRLKENTTSHQALFSKE 203
           R K   D  P+P A ++     T+ RS ++R++E      A++SK+
Sbjct: 90  RQKCMCDCKPSPYAVLLANSTGTVARSADNRVREGMAGETAVYSKQ 135


>05_03_0356 +
           12894195-12894237,12894347-12894484,12894868-12895018,
           12895399-12895526,12895704-12895840,12896742-12896847,
           12898659-12898762,12899159-12899281,12899620-12899700,
           12900159-12900304,12902171-12902243,12902970-12903060,
           12904978-12905018,12906079-12906153,12906402-12906569,
           12907638-12907676,12907759-12907847,12908014-12908078,
           12908794-12908840,12908924-12908983,12909168-12909239,
           12910143-12910172,12910526-12910617,12910719-12910802,
           12911941-12912046,12912171-12912233,12912776-12912870,
           12913000-12913180
          Length = 875

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -2

Query: 835 RADRFKSRKDDGPCAATYSPKPISCNFTKCTAVPFGSSASRFKDQFESDQEDQSAI--DD 662
           R ++ K R+ DG   A  SP P S +  K  +   G+      D  E D ED+  +  DD
Sbjct: 35  REEKRKRRELDGVGLAEESPPPGS-SLGKILSTESGAIGLEQSD--EDDMEDEHTVPGDD 91

Query: 661 ETNELKSN 638
           ETN++ +N
Sbjct: 92  ETNDMINN 99


>06_02_0013 - 10581449-10585105
          Length = 1218

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 21/76 (27%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = +1

Query: 28   HKPPSFYCCNTFSLLLKGNRIVILIIISFGNYRQH*VNL-LIYLLEVFHVL-LMKAEMVQ 201
            H+  +F+C N FS +   + IV+++++   + R+  V L +++L+ +  +L LM A    
Sbjct: 1097 HRYKAFFCFNAFSFM---SSIVVIMLLLSKSVREKNVPLGVLHLIMILDLLALMTAFAAG 1153

Query: 202  ALLKIKPDVTSYFLLI 249
            +  K +  V  Y L+I
Sbjct: 1154 SCRKFRTSVYVYGLVI 1169


>06_03_0950 -
           26266755-26266917,26267273-26267652,26267742-26267972,
           26268247-26268419,26268549-26268693
          Length = 363

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -2

Query: 832 ADRFKSRKDDGPCAATYSPKPISCNFTKCTAVPFGSSASRFKDQFESD 689
           A+R +  + D   AAT++P    C F    A P+G  AS  K +  +D
Sbjct: 65  AERLRLFEADLFDAATFAPAIAGCQFVFLIATPYGLEASNSKYKNTAD 112


>02_04_0508 - 23550785-23551219,23551717-23552670
          Length = 462

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = -2

Query: 430 VKTPGPGYYDVTNYSKKNIAVHHGPLSRSLRFKVPVDRTPAPNAYIVGGGIETILRSHNH 251
           ++ P PG + +      +  +  GPL       +      AP   +  GG+  ++ S   
Sbjct: 39  LRQPPPGPWRLPVIGNLHQLMLRGPLVHRTMADLARGLDDAPLMRLQLGGVPVVVASSPD 98

Query: 250 RLKENTTSHQALFSKEPAP 194
             +E T +H A F+  P P
Sbjct: 99  AAREVTCTHDAAFASRPWP 117


>01_05_0141 -
           18532695-18532709,18533255-18533365,18533585-18533617,
           18534011-18534140,18534219-18535660,18535990-18536358
          Length = 699

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/42 (26%), Positives = 25/42 (59%)
 Frame = -2

Query: 715 RFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFK 590
           R +   ++D+ED  +ID+  NE+ +   ++S +  +  +RF+
Sbjct: 106 RKRKHMDNDEEDNDSIDERINEMINRFEEISRDRDALKLRFE 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,508,211
Number of Sequences: 37544
Number of extensions: 439891
Number of successful extensions: 1025
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1025
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)