Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p07
         (839 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    30   2.4  
U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.        28   9.5  
AL023835-8|CAA19491.1|  483|Caenorhabditis elegans Hypothetical ...    28   9.5  
AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear recep...    28   9.5  
AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear recep...    28   9.5  
AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormo...    28   9.5  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
           protein Y53C10A.10 protein.
          Length = 1582

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 6/87 (6%)
 Frame = -2

Query: 817 SRKDDGPCAATYSPKPISCNFTKCTA-VPFGSSA--SRFKDQFESDQEDQSAIDDETNE- 650
           +R DD    A+  PKPI  N T  +A   F S A  SR + QF S   + SA  +++   
Sbjct: 165 TRSDDKSSTASSGPKPIKANHTNLSAQKSFKSKAIPSR-RRQFFSAPINSSARRNKSRHP 223

Query: 649 --LKSNVPQLSSNFKSKTVRFKPLVKK 575
              K N   L   F S + + KPL KK
Sbjct: 224 APNKKNFTALDLGFMSGS-KLKPLRKK 249


>U67955-2|AAB07583.2|  791|Caenorhabditis elegans Hypothetical
           protein C16H3.3a protein.
          Length = 791

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 24/69 (34%), Positives = 38/69 (55%)
 Frame = -2

Query: 736 PFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSP 557
           P GSSA + K  +E ++E++   ++E +EL S     +S+   KT   KP  +KK+ PS 
Sbjct: 83  PMGSSAKK-KKSYEEEEEEE---EEEEDELPS-----TSSKPIKTP--KPTPEKKNTPSK 131

Query: 556 ADLGPVVNK 530
           A L  +  K
Sbjct: 132 AKLAAMKKK 140


>AC006777-4|AAK72310.1|  333|Caenorhabditis elegans Hypothetical
           protein Y46H3D.7 protein.
          Length = 333

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/92 (22%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
 Frame = -2

Query: 766 SCNFTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQL-SSNFKSKTVRFK 590
           SC + KC  +  G   S  K + +     +  I +E NE   N+  L    F+++  +  
Sbjct: 63  SCRYQKCLQI--GMKESLVKSKKQKTSSSEKTILEELNEAYQNLLDLRKETFRNQEAKL- 119

Query: 589 PLVKKKDEPSPADLGPVVNKML---YRSLPLQ 503
              ++ D+    DL  VV  ++   Y+  P++
Sbjct: 120 TYFEEMDDVCSVDLSLVVETLVRTFYKMAPME 151


>Z69634-9|CAO82013.1|  575|Caenorhabditis elegans Hypothetical
           protein B0001.3b protein.
          Length = 575

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 730 GSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSS-NFKSKTVRFKPLVKKKDEPS 560
           G S  R   +F S  +D    DD  NE  +N  +LSS ++    +  +P V     PS
Sbjct: 432 GDSHLRGTVEFSSSDDDSDDSDDSDNEASNNSNKLSSYSWPMPPILQRPAVSGLSTPS 489


>Z69634-8|CAA93452.4|  591|Caenorhabditis elegans Hypothetical
           protein B0001.3a protein.
          Length = 591

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -2

Query: 730 GSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSS-NFKSKTVRFKPLVKKKDEPS 560
           G S  R   +F S  +D    DD  NE  +N  +LSS ++    +  +P V     PS
Sbjct: 448 GDSHLRGTVEFSSSDDDSDDSDDSDNEASNNSNKLSSYSWPMPPILQRPAVSGLSTPS 505


>Z27081-3|CAH19085.1|  869|Caenorhabditis elegans Hypothetical
           protein M01A8.2b protein.
          Length = 869

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 694 SDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPS 560
           S + D S+  D+T   KS         KS+ +  KP+VKKK+EP+
Sbjct: 248 SHESDSSSKKDDTKSDKSPTK------KSQKMEEKPVVKKKEEPA 286


>Z27081-2|CAA81607.2|  937|Caenorhabditis elegans Hypothetical
           protein M01A8.2a protein.
          Length = 937

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -2

Query: 694 SDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPS 560
           S + D S+  D+T   KS         KS+ +  KP+VKKK+EP+
Sbjct: 316 SHESDSSSKKDDTKSDKSPTK------KSQKMEEKPVVKKKEEPA 354


>U37424-1|AAA80355.1|  359|Caenorhabditis elegans NHR-2 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 766 SCNFTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNF 614
           +C F KC AV  G +    +   E+D++ + ++     E+ S V +L++ F
Sbjct: 166 ACRFAKCLAV--GMNRDNVRVNKETDKDVKPSVASPNFEMTSQVKELTAAF 214


>AL023835-8|CAA19491.1|  483|Caenorhabditis elegans Hypothetical
           protein Y37A1B.8 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 415 PGYYDVTNYSKKNIAVHHGPLSRSLRFKVPVDRTPAPNAYIVG 287
           PG  ++ + S + I VH  PL  S R + P   T A NA  +G
Sbjct: 428 PGIMNIISKSNRTIVVHGNPLLPSPR-RFPFRVTYATNAAFIG 469


>AF332201-1|AAK17972.1|  474|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 474

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 766 SCNFTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNF 614
           +C F KC AV  G +    +   E+D++ + ++     E+ S V +L++ F
Sbjct: 281 ACRFAKCLAV--GMNRDNVRVNKETDKDVKPSVASPNFEMTSQVKELTAAF 329


>AF332200-1|AAK17971.1|  453|Caenorhabditis elegans nuclear receptor
           NHR-2 protein.
          Length = 453

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 766 SCNFTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNF 614
           +C F KC AV  G +    +   E+D++ + ++     E+ S V +L++ F
Sbjct: 277 ACRFAKCLAV--GMNRDNVRVNKETDKDVKPSVASPNFEMTSQVKELTAAF 325


>AF000195-4|AAC24271.2|  359|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 2 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = -2

Query: 766 SCNFTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNF 614
           +C F KC AV  G +    +   E+D++ + ++     E+ S V +L++ F
Sbjct: 166 ACRFAKCLAV--GMNRDNVRVNKETDKDVKPSVASPNFEMTSQVKELTAAF 214


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,030,549
Number of Sequences: 27780
Number of extensions: 408713
Number of successful extensions: 1278
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)