Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p07
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          26   0.50 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      26   0.50 
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    26   0.50 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    24   2.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.5  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 511 PLQQMAPFFSSEGRFMPWRNWISIFGNVKTPGPGYY 404
           PL +M P+F      +   N   IFG + T   G Y
Sbjct: 161 PLYEMCPYFFFNSEVLQKANHALIFGKLDTKTSGKY 196


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 511 PLQQMAPFFSSEGRFMPWRNWISIFGNVKTPGPGYY 404
           PL +M P+F      +   N   IFG + T   G Y
Sbjct: 161 PLYEMCPYFFFNSEVLQKANHALIFGKLDTKTSGKY 196


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 18/62 (29%), Positives = 31/62 (50%)
 Frame = -2

Query: 712 FKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADLGPVVN 533
           F   F SD++ Q+AI       K+NVP     +  KT  F  ++  +++  P+ L  + N
Sbjct: 41  FDYNFGSDEKRQAAIQSGEYNYKNNVPIDVDRWNGKT--FVTIL--RNDGVPSSLNVISN 96

Query: 532 KM 527
           K+
Sbjct: 97  KI 98


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = -2

Query: 304 NAYIVGGGIETILRSHNHRLKENTTSHQALFSKEPAPFQLSLEERETLLINKSINLLSVD 125
           N  +V    +T+    + ++K+N      + + +   + L+L +R   ++N  +NL  V 
Sbjct: 338 NIDVVARNEDTLQMVVSMKIKQNVPQSGRVNNTQRNEYLLALSDRNQNVLNNDLNLEHV- 396

Query: 124 DNFQ 113
            NFQ
Sbjct: 397 -NFQ 399


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
 Frame = -2

Query: 469 FMPWR-NWISIFGNVKTPGPGYYDVTNYSKKNIAVHHGPLSRSLRFKVP 326
           F+P    W+ I GN       YY + +   K +   H  ++      VP
Sbjct: 568 FIPGNLKWLDIHGNFIESLGNYYKIRDSKVKTLDASHNRITELSPLSVP 616


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,025
Number of Sequences: 438
Number of extensions: 5170
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)