Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p06
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1259.05c |cox9||cytochrome c oxidase subunit VIIa|Schizosacc...    26   2.0  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   2.6  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   4.6  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   4.6  
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    25   4.6  
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.1  
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    24   8.0  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    24   8.0  

>SPCC1259.05c |cox9||cytochrome c oxidase subunit
           VIIa|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 58

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 204 SIRLAQGLGGLCWWWILYH 148
           S+ +  G  G C+WW  YH
Sbjct: 19  SVTMILGTLGACYWWFGYH 37


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 226 ATNAFQKIDSVSSRAWWIVLVVDS 155
           AT  FQK+    +++W IVLV ++
Sbjct: 98  ATKWFQKVSKNENQSWMIVLVAEA 121


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 207 KSIRLAQGLGGLCWWWI 157
           KS+     +GGLCWW I
Sbjct: 280 KSVFQGYLMGGLCWWII 296


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 269 VCFKLSPAFCSLRSRIALVSKVLVXXXXXXXXXXXXYFEVGKTLSQN 409
           VC+ L    C  +S  +LVSK+L             +F+ GK +  N
Sbjct: 756 VCYCLDDLECIDQSINSLVSKMLTSASPEQVDVNILFFQFGKLIETN 802


>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +3

Query: 57  NQEEFQALHQSMYWDQYKATHQLYAQVQLQCDTESTTSTIHQALELTESIFWKALVAVHG 236
           N+EE + L   +    Y+++        L      TTS I + +  ++SI W ++    G
Sbjct: 387 NEEEAKLL--DLVKSSYRSSFHTKKMTSLFTHNNHTTSNIQREIPASDSIAWHSISKKLG 444

Query: 237 T 239
           T
Sbjct: 445 T 445


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 3/24 (12%)
 Frame = -1

Query: 202 DSVSSRAWWIVLVVD---SVSHCN 140
           +++  RAWW+++V+D   S+S C+
Sbjct: 608 EALCRRAWWVLVVLDRWHSMSTCS 631


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 244 NSMSCISFGLFQAVASILQPTEQNSS 321
           ++++   F LF+   +++ PT+QNSS
Sbjct: 525 HNVTTAEFRLFKRYGTLVPPTKQNSS 550


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 168  STIHQALELTESIFWKALVAVHGTSK 245
            S   + +E+ ES+ W +L+++ GTS+
Sbjct: 1150 SRTSKGVEILESLHWYSLMSLMGTSQ 1175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,918
Number of Sequences: 5004
Number of extensions: 37482
Number of successful extensions: 101
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)