Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p06
(412 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR542121-1|CAG46918.1| 105|Homo sapiens NDUFB2 protein. 66 3e-11
AF050639-1|AAD05428.1| 105|Homo sapiens NADH-ubiquinone oxidore... 66 3e-11
BC063026-1|AAH63026.1| 95|Homo sapiens NDUFB2 protein protein. 64 1e-10
AC006344-2|AAD43191.1| 95|Homo sapiens NADH-ubiquinone oxidore... 64 1e-10
Z29505-1|CAA82631.1| 299|Homo sapiens sub2.3 protein. 31 1.1
X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein. 31 1.1
U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein. 31 1.1
BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protei... 31 1.1
AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein. 31 1.1
D31765-1|BAA06543.1| 903|Homo sapiens KIAA0061 protein. 31 2.0
BC114486-1|AAI14487.1| 1281|Homo sapiens SH3TC2 protein protein. 31 2.0
BC113879-1|AAI13880.1| 1288|Homo sapiens SH3 domain and tetratri... 31 2.0
BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor... 31 2.0
AY341075-1|AAR03497.1| 1288|Homo sapiens KIAA1985 protein. 31 2.0
AK127248-1|BAC86899.1| 596|Homo sapiens protein ( Homo sapiens ... 31 2.0
AB075865-1|BAB85571.1| 955|Homo sapiens KIAA1985 protein protein. 31 2.0
AK057830-1|BAB71591.1| 165|Homo sapiens protein ( Homo sapiens ... 29 4.5
AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein. 29 6.0
U39403-1|AAC99999.1| 500|Homo sapiens protein ( Human fetal cra... 29 7.9
D30755-1|BAA06416.2| 636|Homo sapiens KIAA0113 protein. 29 7.9
BC014008-1|AAH14008.1| 636|Homo sapiens TNIP1 protein protein. 29 7.9
BC012133-1|AAH12133.1| 636|Homo sapiens TNFAIP3 interacting pro... 29 7.9
AY012155-1|AAG42154.1| 636|Homo sapiens virion-associated nucle... 29 7.9
AJ011896-1|CAA09856.1| 635|Homo sapiens Naf1 beta protein protein. 29 7.9
AJ011895-1|CAA09855.1| 636|Homo sapiens Naf1 alpha protein prot... 29 7.9
AB252982-1|BAF48799.1| 630|Homo sapiens Nef-associated factor 1... 29 7.9
AB252973-1|BAF48790.1| 635|Homo sapiens Nef-associated factor 1... 29 7.9
AB252972-1|BAF48789.1| 636|Homo sapiens Nef-associated factor 1... 29 7.9
AB252971-1|BAF48788.1| 635|Homo sapiens Nef-associated factor 1... 29 7.9
AB252970-1|BAF48787.1| 636|Homo sapiens Nef-associated factor 1... 29 7.9
>CR542121-1|CAG46918.1| 105|Homo sapiens NDUFB2 protein.
Length = 105
Score = 66.5 bits (155), Expect = 3e-11
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = -2
Query: 264 RNAGHGVWT---YRVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPS 94
R+AG GV YR P + ++ + ++ GL W+WIL+ + E + G +PY DPS
Sbjct: 32 RHAGGGVHIEPRYRQFPQL-TRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPS 90
Query: 93 TWTDEELGIPPD 58
WTDEELGIPPD
Sbjct: 91 QWTDEELGIPPD 102
>AF050639-1|AAD05428.1| 105|Homo sapiens NADH-ubiquinone
oxidoreductase AGGG subunit protein.
Length = 105
Score = 66.5 bits (155), Expect = 3e-11
Identities = 32/72 (44%), Positives = 44/72 (61%), Gaps = 3/72 (4%)
Frame = -2
Query: 264 RNAGHGVWT---YRVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPS 94
R+AG GV YR P + ++ + ++ GL W+WIL+ + E + G +PY DPS
Sbjct: 32 RHAGGGVHIEPRYRQFPQL-TRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPS 90
Query: 93 TWTDEELGIPPD 58
WTDEELGIPPD
Sbjct: 91 QWTDEELGIPPD 102
>BC063026-1|AAH63026.1| 95|Homo sapiens NDUFB2 protein protein.
Length = 95
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = -2
Query: 222 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPSTWTDEELGIPPD 58
P ++ + ++ GL W+WIL+ + E + G +PY DPS WTDEELGIPPD
Sbjct: 38 PQLTRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPSQWTDEELGIPPD 92
>AC006344-2|AAD43191.1| 95|Homo sapiens NADH-ubiquinone
oxidoreductase AGGG subunit protein.
Length = 95
Score = 64.5 bits (150), Expect = 1e-10
Identities = 25/55 (45%), Positives = 35/55 (63%)
Frame = -2
Query: 222 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPSTWTDEELGIPPD 58
P ++ + ++ GL W+WIL+ + E + G +PY DPS WTDEELGIPPD
Sbjct: 38 PQLTRSQVFQSEFFSGLMWFWILWRFWHDSEEVLGHFPYPDPSQWTDEELGIPPD 92
>Z29505-1|CAA82631.1| 299|Homo sapiens sub2.3 protein.
Length = 299
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 144 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 43
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein.
Length = 356
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 144 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 43
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein.
Length = 356
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 144 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 43
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protein 1
protein.
Length = 356
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 144 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 43
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein.
Length = 356
Score = 31.5 bits (68), Expect = 1.1
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 144 ATEPEHITGEWPYIDPSTWTDEELGIPPDSAGCI 43
++ PE + G W +D ST T EL IP + GCI
Sbjct: 262 SSSPE-VKGYWASLDASTQTTHELTIPNNLIGCI 294
>D31765-1|BAA06543.1| 903|Homo sapiens KIAA0061 protein.
Length = 903
Score = 30.7 bits (66), Expect = 2.0
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Frame = +1
Query: 79 FISPCTGINIRPLTSYMLRF------SCNVIQNPPPAQSTKPLS*PNRFFGRHWWRYTV- 237
+ISP TGI I LT M RF S +++ A S + WW T
Sbjct: 292 WISPTTGIIISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCK 351
Query: 238 RPNSMS--CISFGLFQAVASILQPTE 309
+P+S+S C +F+ + I P E
Sbjct: 352 KPDSVSLHCRQEAIFELLGGITSPAE 377
>BC114486-1|AAI14487.1| 1281|Homo sapiens SH3TC2 protein protein.
Length = 1281
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 96 WDQYKATHQLYAQVQLQCDTESTTSTIHQALELTESIFWKALVAVHGTSKLHVL 257
W Q+ A + L V+L C+ +++ T +EL + W A V V G H L
Sbjct: 883 WAQHPARNYLLQAVRLYCELQASKET---DMELVQVFLWLAQVLVSGHQLTHGL 933
>BC113879-1|AAI13880.1| 1288|Homo sapiens SH3 domain and
tetratricopeptide repeats 2 protein.
Length = 1288
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 96 WDQYKATHQLYAQVQLQCDTESTTSTIHQALELTESIFWKALVAVHGTSKLHVL 257
W Q+ A + L V+L C+ +++ T +EL + W A V V G H L
Sbjct: 890 WAQHPARNYLLQAVRLYCELQASKET---DMELVQVFLWLAQVLVSGHQLTHGL 940
>BC011529-1|AAH11529.1| 1024|Homo sapiens processing of precursor 1,
ribonuclease P/MRP subunit (S. cerevisiae) protein.
Length = 1024
Score = 30.7 bits (66), Expect = 2.0
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 9/86 (10%)
Frame = +1
Query: 79 FISPCTGINIRPLTSYMLRF------SCNVIQNPPPAQSTKPLS*PNRFFGRHWWRYTV- 237
+ISP TGI I LT M RF S +++ A S + WW T
Sbjct: 413 WISPTTGIIISDLTMEMNRFRLIGPLSHSILTEAIKAASVHTVGEDTEETPHRWWIETCK 472
Query: 238 RPNSMS--CISFGLFQAVASILQPTE 309
+P+S+S C +F+ + I P E
Sbjct: 473 KPDSVSLHCRQEAIFELLGGITSPAE 498
>AY341075-1|AAR03497.1| 1288|Homo sapiens KIAA1985 protein.
Length = 1288
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 96 WDQYKATHQLYAQVQLQCDTESTTSTIHQALELTESIFWKALVAVHGTSKLHVL 257
W Q+ A + L V+L C+ +++ T +EL + W A V V G H L
Sbjct: 890 WAQHPARNYLLQAVRLYCELQASKET---DMELVQVFLWLAQVLVSGHQLTHGL 940
>AK127248-1|BAC86899.1| 596|Homo sapiens protein ( Homo sapiens
cDNA FLJ45315 fis, clone BRHIP3005231. ).
Length = 596
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 96 WDQYKATHQLYAQVQLQCDTESTTSTIHQALELTESIFWKALVAVHGTSKLHVL 257
W Q+ A + L V+L C+ +++ T +EL + W A V V G H L
Sbjct: 437 WAQHPARNYLLQAVRLYCELQASKET---DMELVQVFLWLAQVLVSGHQLTHGL 487
>AB075865-1|BAB85571.1| 955|Homo sapiens KIAA1985 protein protein.
Length = 955
Score = 30.7 bits (66), Expect = 2.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +3
Query: 96 WDQYKATHQLYAQVQLQCDTESTTSTIHQALELTESIFWKALVAVHGTSKLHVL 257
W Q+ A + L V+L C+ +++ T +EL + W A V V G H L
Sbjct: 557 WAQHPARNYLLQAVRLYCELQASKET---DMELVQVFLWLAQVLVSGHQLTHGL 607
>AK057830-1|BAB71591.1| 165|Homo sapiens protein ( Homo sapiens
cDNA FLJ25101 fis, clone CBR01328. ).
Length = 165
Score = 29.5 bits (63), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 243 WTYRVPPPMPSKKSIRLAQGLGGLCW 166
W YR PPP P+ + G+ LCW
Sbjct: 55 WYYRCPPPQPANFCVFTRDGV-SLCW 79
>AF499232-2|AAP29639.1| 1183|Homo sapiens pol protein protein.
Length = 1183
Score = 29.1 bits (62), Expect = 6.0
Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Frame = -2
Query: 288 GDSLKQTKRNAGHGVWTYRVPPPMP-SKKSIRLAQGLGGLCWWWI-LYHIATEPEHITGE 115
G +++Q +R+ G P P S+K +R G G C WI + + +P + +
Sbjct: 379 GFTIRQGERSLGSERKQVICTLPEPKSRKQVRKFLGAAGFCRLWIPNFAVLAKPLYEVTK 438
Query: 114 WPYIDPSTWTDEE 76
W +P W ++
Sbjct: 439 WGDREPFEWGSQQ 451
>U39403-1|AAC99999.1| 500|Homo sapiens protein ( Human fetal
craniofacial mRNA, partial cds. ).
Length = 500
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 400 YHVEPHPEHLCGAYPYAYP 418
>D30755-1|BAA06416.2| 636|Homo sapiens KIAA0113 protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>BC014008-1|AAH14008.1| 636|Homo sapiens TNIP1 protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>BC012133-1|AAH12133.1| 636|Homo sapiens TNFAIP3 interacting
protein 1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AY012155-1|AAG42154.1| 636|Homo sapiens virion-associated
nuclear-shuttling protein protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AJ011896-1|CAA09856.1| 635|Homo sapiens Naf1 beta protein protein.
Length = 635
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AJ011895-1|CAA09855.1| 636|Homo sapiens Naf1 alpha protein
protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252982-1|BAF48799.1| 630|Homo sapiens Nef-associated factor 1
SNP protein.
Length = 630
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252973-1|BAF48790.1| 635|Homo sapiens Nef-associated factor 1
isoform 4 protein.
Length = 635
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252972-1|BAF48789.1| 636|Homo sapiens Nef-associated factor 1
isoform 3 protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252971-1|BAF48788.1| 635|Homo sapiens Nef-associated factor 1
isoform 2 protein.
Length = 635
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
>AB252970-1|BAF48787.1| 636|Homo sapiens Nef-associated factor 1
isoform 1 protein.
Length = 636
Score = 28.7 bits (61), Expect = 7.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = -2
Query: 153 YHIATEPEHITGEWPYIDP 97
YH+ PEH+ G +PY P
Sbjct: 535 YHVEPHPEHLCGAYPYAYP 553
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,802,739
Number of Sequences: 237096
Number of extensions: 1506767
Number of successful extensions: 3345
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 3184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3344
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3030544982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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