Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p06
         (412 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT015190-1|AAT94419.1|   94|Drosophila melanogaster RH18150p pro...    69   3e-12
BT024965-1|ABE01195.1|  231|Drosophila melanogaster IP15245p pro...    29   1.8  
BT010116-1|AAQ22585.1| 1083|Drosophila melanogaster AT29108p pro...    29   1.8  
AF023270-1|AAB80936.1| 1083|Drosophila melanogaster probable tra...    29   1.8  
AF023269-1|AAB80935.1| 1059|Drosophila melanogaster probable tra...    29   1.8  
AE014296-380|AAF47587.2| 1122|Drosophila melanogaster CG1828-PA,...    29   1.8  
AE014296-379|AAN11502.2| 1083|Drosophila melanogaster CG1828-PB,...    29   1.8  
AB083008-1|BAC54898.1| 1044|Drosophila melanogaster supressor of...    29   1.8  
BT023193-1|AAY55609.1|  505|Drosophila melanogaster IP03221p pro...    29   3.2  
AE014134-77|AAF51514.1|  505|Drosophila melanogaster CG11592-PA ...    29   3.2  
BT022917-1|AAY55333.1|  158|Drosophila melanogaster IP04421p pro...    27   7.3  
BT029971-1|ABM92845.1|  251|Drosophila melanogaster IP18102p pro...    27   9.7  
AY070677-1|AAL48148.1|  131|Drosophila melanogaster RH16027p pro...    27   9.7  
AE013599-1687|AAM68607.1|  131|Drosophila melanogaster CG17041-P...    27   9.7  
AE013599-1686|AAM68606.1|  131|Drosophila melanogaster CG17041-P...    27   9.7  
AE013599-1685|AAF58391.2|  131|Drosophila melanogaster CG17041-P...    27   9.7  

>BT015190-1|AAT94419.1|   94|Drosophila melanogaster RH18150p
           protein.
          Length = 94

 Score = 68.5 bits (160), Expect = 3e-12
 Identities = 28/63 (44%), Positives = 41/63 (65%)
 Frame = -2

Query: 246 VWTYRVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPYIDPSTWTDEELGI 67
           V +YR  PP  SK +   A  +GG  WWW+++H+  EP+HITGE+ Y +   W++ ELG+
Sbjct: 30  VVSYRNGPPPHSKATKIGALTVGGAMWWWVIWHLWHEPDHITGEFDYPNSRKWSNTELGV 89

Query: 66  PPD 58
           P D
Sbjct: 90  PKD 92


>BT024965-1|ABE01195.1|  231|Drosophila melanogaster IP15245p
           protein.
          Length = 231

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201 IRLAQGLGGLCWWWILYHIATEPEHI--TGEWPYIDPSTWTDEE 76
           IR ++G+  L W  I+  I  +PE     G W ++DP + ++ E
Sbjct: 6   IRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGE 49


>BT010116-1|AAQ22585.1| 1083|Drosophila melanogaster AT29108p protein.
          Length = 1083

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201  IRLAQGLGGLCWWWILYHIATEPEHI--TGEWPYIDPSTWTDEE 76
            IR ++G+  L W  I+  I  +PE     G W ++DP + ++ E
Sbjct: 897  IRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGE 940


>AF023270-1|AAB80936.1| 1083|Drosophila melanogaster probable
           transcriptional regulatordre4 protein.
          Length = 1083

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201 IRLAQGLGGLCWWWILYHIATEPEHI--TGEWPYIDPSTWTDEE 76
           IR ++G+  L W  I+  I  +PE     G W ++DP + ++ E
Sbjct: 858 IRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGE 901


>AF023269-1|AAB80935.1| 1059|Drosophila melanogaster probable
           transcriptional regulatordre4 protein.
          Length = 1059

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201 IRLAQGLGGLCWWWILYHIATEPEHI--TGEWPYIDPSTWTDEE 76
           IR ++G+  L W  I+  I  +PE     G W ++DP + ++ E
Sbjct: 834 IRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGE 877


>AE014296-380|AAF47587.2| 1122|Drosophila melanogaster CG1828-PA,
            isoform A protein.
          Length = 1122

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201  IRLAQGLGGLCWWWILYHIATEPEHI--TGEWPYIDPSTWTDEE 76
            IR ++G+  L W  I+  I  +PE     G W ++DP + ++ E
Sbjct: 897  IRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGE 940


>AE014296-379|AAN11502.2| 1083|Drosophila melanogaster CG1828-PB,
            isoform B protein.
          Length = 1083

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201  IRLAQGLGGLCWWWILYHIATEPEHI--TGEWPYIDPSTWTDEE 76
            IR ++G+  L W  I+  I  +PE     G W ++DP + ++ E
Sbjct: 897  IRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGE 940


>AB083008-1|BAC54898.1| 1044|Drosophila melanogaster supressor of Ty
           element 16 protein.
          Length = 1044

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -2

Query: 201 IRLAQGLGGLCWWWILYHIATEPEHI--TGEWPYIDPSTWTDEE 76
           IR ++G+  L W  I+  I  +PE     G W ++DP + ++ E
Sbjct: 858 IRYSEGVQSLNWQKIMKTITDDPEGFFEQGGWTFLDPESGSEGE 901


>BT023193-1|AAY55609.1|  505|Drosophila melanogaster IP03221p
           protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 177 GLCWWWILY-----HIATEPEHITGEWPYIDPSTWTDEELGIPPD 58
           GL W W+++     H+A   +   G   + DP+ W D+ L    D
Sbjct: 2   GLHWQWLIWALVGLHVALATKWYGGGMDFNDPTAWLDDHLPCAQD 46


>AE014134-77|AAF51514.1|  505|Drosophila melanogaster CG11592-PA
           protein.
          Length = 505

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -2

Query: 177 GLCWWWILY-----HIATEPEHITGEWPYIDPSTWTDEELGIPPD 58
           GL W W+++     H+A   +   G   + DP+ W D+ L    D
Sbjct: 2   GLHWQWLIWALVGLHVALATKWYGGGMDFNDPTAWLDDHLPCAQD 46


>BT022917-1|AAY55333.1|  158|Drosophila melanogaster IP04421p
           protein.
          Length = 158

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 230 TRYVQTPCPAFRLVCFKLSPAFCS 301
           TRY++ PC A+R  C ++   F S
Sbjct: 20  TRYIRRPCVAYRQHCLQMRTYFIS 43


>BT029971-1|ABM92845.1|  251|Drosophila melanogaster IP18102p
           protein.
          Length = 251

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 234 RVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEP 133
           RVP P+P          LG  CW  I++    EP
Sbjct: 141 RVPKPLPPPSEFTPTPLLGSRCWHPIMWQDPPEP 174


>AY070677-1|AAL48148.1|  131|Drosophila melanogaster RH16027p
           protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 234 RVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEP 133
           RVP P+P          LG  CW  I++    EP
Sbjct: 21  RVPKPLPPPSEFTPTPLLGSRCWHPIMWQDPPEP 54


>AE013599-1687|AAM68607.1|  131|Drosophila melanogaster CG17041-PC,
           isoform C protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 234 RVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEP 133
           RVP P+P          LG  CW  I++    EP
Sbjct: 21  RVPKPLPPPSEFTPTPLLGSRCWHPIMWQDPPEP 54


>AE013599-1686|AAM68606.1|  131|Drosophila melanogaster CG17041-PB,
           isoform B protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 234 RVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEP 133
           RVP P+P          LG  CW  I++    EP
Sbjct: 21  RVPKPLPPPSEFTPTPLLGSRCWHPIMWQDPPEP 54


>AE013599-1685|AAF58391.2|  131|Drosophila melanogaster CG17041-PA,
           isoform A protein.
          Length = 131

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = -2

Query: 234 RVPPPMPSKKSIRLAQGLGGLCWWWILYHIATEP 133
           RVP P+P          LG  CW  I++    EP
Sbjct: 21  RVPKPLPPPSEFTPTPLLGSRCWHPIMWQDPPEP 54


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,923
Number of Sequences: 53049
Number of extensions: 455931
Number of successful extensions: 1210
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1209331668
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)