Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p06
         (412 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    46   1e-05
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    46   1e-05
Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical pr...    30   0.75 
Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical pr...    28   3.0  
U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical pr...    27   4.0  
U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical pr...    27   4.0  
Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related...    26   9.2  
AC026301-8|AAK68889.1|  302|Caenorhabditis elegans Hypothetical ...    26   9.2  

>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 183 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDSA 52
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP DSA
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 45.6 bits (103), Expect = 1e-05
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -2

Query: 183 LGGLCWWWILYHIATEPEHITGEW--PYIDPSTWTDEELGIPPDSA 52
           +  + W W  YH+     H+ G W  PY+  S +TDEELGIP DSA
Sbjct: 100 ISAVIWAWFSYHMYYHSGHLLGHWYMPYL--SEFTDEELGIPKDSA 143


>Z68108-1|CAA92134.1|  194|Caenorhabditis elegans Hypothetical
           protein T05A10.2 protein.
          Length = 194

 Score = 29.9 bits (64), Expect = 0.75
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 246 LHVLHFVW-FVSSCRQHFAAYGAE*LSLAKFLSTLFLVI 359
           L ++ FVW F++SC   F  Y    LS   FL T+FL +
Sbjct: 91  LEIVAFVWNFLTSCTCCFKKYLLHPLSPLSFLITIFLTV 129


>Z92834-9|CAB07386.2|  192|Caenorhabditis elegans Hypothetical
           protein F39B2.5 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 88  PCTGINIRPLTSYMLRFSCNVIQNPPPAQSTKPL 189
           P T   + P   Y+ RF+    Q  PP   T PL
Sbjct: 125 PLTKRELLPSLQYLCRFTLKTSQQKPPTPKTAPL 158


>U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical
           protein C02G6.2 protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 406 LGKCFTYFKINRGSQQITRNNVDKNFANESYSAP 305
           L KC T FKI+R    +   ++ ++  N ++S P
Sbjct: 627 LTKCMTNFKIDRTRFDVVFESLKRSLTNHAFSQP 660


>U41105-7|AAA82402.2|  184|Caenorhabditis elegans Hypothetical
           protein T02G5.11 protein.
          Length = 184

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 127 MLRFSCNVIQNPPPAQ 174
           MLR  C+  QNPPPA+
Sbjct: 1   MLRDDCDTTQNPPPAE 16


>Z99277-6|CAB16484.1|  677|Caenorhabditis elegans Hypothetical
           protein Y53C12A.1 protein.
          Length = 677

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +1

Query: 70  SKLFISPCTGINIRPLTSYMLRFSCNVIQNPPPAQ 174
           SK+++   TG+ +R  +  +  F  +  +NPP AQ
Sbjct: 430 SKVYLESLTGVAVRQASQIVSPFDFSDDENPPNAQ 464


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 22/94 (23%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
 Frame = +3

Query: 81  HQSMYWDQYKATHQLYAQVQLQCDTESTTSTI-HQALELTESIFWKALVAVHGTSKLHVL 257
           H+S  WD   AT   YAQ+   C  +     I ++ +   ++IF+   + +      +V 
Sbjct: 218 HESAEWDLLSATSSRYAQIYPGCCGQQYYIDIKYRIIIRRKAIFFTVTLTIPCMLIANVT 277

Query: 258 HFVWFVSSCRQHFAAYGAE*LSLAKFLSTLFLVI 359
            FV+ +    +H   Y    +S+    S  +LV+
Sbjct: 278 PFVFLILP-NEHKMTYS---ISVLVAFSVFYLVL 307


>U88308-9|AAB42325.1|  933|Caenorhabditis elegans Patched related
           family protein 2 protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 3/21 (14%)
 Frame = -2

Query: 165 WWILYHIATEPE---HITGEW 112
           W+++YH+   PE   +I+GEW
Sbjct: 206 WFMIYHLKFHPEEMSYISGEW 226


>AC026301-8|AAK68889.1|  302|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.10 protein.
          Length = 302

 Score = 26.2 bits (55), Expect = 9.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 397 CFTYFKINRGSQQITRNNVDKNFANESY 314
           C  Y + +  S  +T N ++KNF  E+Y
Sbjct: 74  CTKYAEASNDSTILTHNKLEKNFDGENY 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,225,526
Number of Sequences: 27780
Number of extensions: 220014
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)