Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p06
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced prot...    22   2.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.1  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   4.1  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    21   7.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.5  

>AB264333-1|BAF44088.1|   36|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 36

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 153 YHIATEPEHITGEWPYID 100
           YH+A  P H++   P +D
Sbjct: 5   YHVAQLPHHLSPNMPTMD 22


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -1

Query: 400 KCFTYFKINRGSQQITRNNVDKNFAN 323
           +C  Y   N G+Q     N D   AN
Sbjct: 418 RCGRYHNQNAGNQNADNQNADNQNAN 443


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 206 FLEGIGGGTRYVQTPCPAF 262
           F E I  G+ Y+QT  PA+
Sbjct: 322 FEEDINEGSNYMQTRVPAW 340


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/40 (22%), Positives = 19/40 (47%)
 Frame = +3

Query: 186 LELTESIFWKALVAVHGTSKLHVLHFVWFVSSCRQHFAAY 305
           L+ T  + WK       + +++V +F +   SC   F ++
Sbjct: 140 LKYTGDVSWKPPAIYKSSCEINVEYFPFDEQSCIMKFGSW 179


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 274 TNQTKCRTWSLDVPCTAT 221
           T  T C+ W++D  C  T
Sbjct: 181 TAATDCQLWAIDRQCFQT 198


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 9/39 (23%), Positives = 15/39 (38%)
 Frame = -2

Query: 222 PMPSKKSIRLAQGLGGLCWWWILYHIATEPEHITGEWPY 106
           P+P    +    GL  L W W+ ++  +        W Y
Sbjct: 215 PLPLGCPVNAIMGLFVLWWGWLAFNSGSTYGVSGQRWQY 253


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 171 CWWWILYHIAT 139
           CWW I + I T
Sbjct: 489 CWWKICWTITT 499


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 171 CWWWILYHIAT 139
           CWW I + I T
Sbjct: 542 CWWKICWTITT 552


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,548
Number of Sequences: 438
Number of extensions: 2711
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)