Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p05
         (387 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0790 - 11212540-11212698,11212777-11212873,11212974-112130...    28   3.0  
06_01_1068 + 8715714-8716799,8716899-8717159                           26   9.1  

>03_02_0790 -
           11212540-11212698,11212777-11212873,11212974-11213030,
           11213291-11213379,11213463-11213549,11213820-11213935,
           11214026-11214281,11214361-11214510,11214948-11215106,
           11215456-11215493,11215972-11216063,11216528-11216682,
           11217185-11217253
          Length = 507

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 271 RFDFFILFCTHFLNQNFCRYLVC 339
           R +FF+ FC   LN ++  Y +C
Sbjct: 225 RLNFFVAFCCIVLNNDYTLYYIC 247


>06_01_1068 + 8715714-8716799,8716899-8717159
          Length = 448

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -1

Query: 177 DVQIQNENEVPDLPVIADIKEWIQSPWT 94
           D Q+Q  N    L   A I+ W  SPWT
Sbjct: 317 DAQLQQSNLALSLNYEAIIESWGTSPWT 344


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,712,658
Number of Sequences: 37544
Number of extensions: 108081
Number of successful extensions: 191
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 648814968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)