Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p05
         (387 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-411|AAF51253.2|  575|Drosophila melanogaster CG31684-PA...    27   8.5  
AE013599-2763|AAO41353.2|  929|Drosophila melanogaster CG15078-P...    27   8.5  
AE013599-2762|ABI31105.1|  940|Drosophila melanogaster CG15078-P...    27   8.5  

>AE014134-411|AAF51253.2|  575|Drosophila melanogaster CG31684-PA
           protein.
          Length = 575

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 208 HYNAALFSASSVCDMPGF*HVR----FDFFILFCTHFLN 312
           HY AA++   S+    GF   +    FDFF   C+H+ N
Sbjct: 519 HYRAAVYYGESIISERGFWAQQCGGWFDFFSQRCSHYSN 557


>AE013599-2763|AAO41353.2|  929|Drosophila melanogaster CG15078-PA,
           isoform A protein.
          Length = 929

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 266 CQNPGIS--QTLEALNRAAL*CK*DTQIRMFLTFKFRTKMK 150
           C  P +S  Q LEAL    L  K + Q+R F+ F+ R  +K
Sbjct: 220 CSPPELSTQQQLEALQANELRRKREAQLRQFVFFQLRVHLK 260


>AE013599-2762|ABI31105.1|  940|Drosophila melanogaster CG15078-PC,
           isoform C protein.
          Length = 940

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = -2

Query: 266 CQNPGIS--QTLEALNRAAL*CK*DTQIRMFLTFKFRTKMK 150
           C  P +S  Q LEAL    L  K + Q+R F+ F+ R  +K
Sbjct: 220 CSPPELSTQQQLEALQANELRRKREAQLRQFVFFQLRVHLK 260


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,164,060
Number of Sequences: 53049
Number of extensions: 194741
Number of successful extensions: 306
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 306
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1066083345
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)