Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p03
         (468 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.6  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   3.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   3.8  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   6.6  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   6.6  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.6  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   6.6  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   6.6  

>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 258 FLGYSTNGFSPIEFLLF 308
           +LGYS + F+PI + +F
Sbjct: 312 WLGYSNSAFNPIIYSIF 328


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 90  LGILIIWGLYSTDG 49
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 90  LGILIIWGLYSTDG 49
           L +L +WG Y+T+G
Sbjct: 188 LPLLKVWGRYTTEG 201


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 137 TKILRNVSEILTDAVIWAS 81
           T ILR + E+  DA  W S
Sbjct: 324 TSILRYLQELHVDAPTWIS 342


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 123 PQYLCSLLPNLLKSHHEFLKQ*YHN 197
           P+ + SLL N + +++ + K  Y+N
Sbjct: 301 PKIISSLLNNTIHNNNNYKKLQYYN 325


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 123 PQYLCSLLPNLLKSHHEFLKQ*YHN 197
           P+ + SLL N + +++ + K  Y+N
Sbjct: 312 PKIISSLLNNTIHNNNNYKKLQYYN 336


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 123 PQYLCSLLPNLLKSHHEFLKQ*YHN 197
           P+ + SLL N + +++ + K  Y+N
Sbjct: 312 PKIISSLLNNTIHNNNNYKKLQYYN 336


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 123 PQYLCSLLPNLLKSHHEFLKQ*YHN 197
           P+ + SLL N + +++ + K  Y+N
Sbjct: 301 PKIISSLLNNTIHNNNNYKKLQYYN 325


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,123
Number of Sequences: 438
Number of extensions: 2138
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)