Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p02
         (295 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.0  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   1.4  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   1.8  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   1.8  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   5.5  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    19   9.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   9.6  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    19   9.6  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 171 INQCCQNCKCDSSCI 127
           I +C + C CD  CI
Sbjct: 471 IYECNKRCNCDIDCI 485


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 9/14 (64%), Positives = 9/14 (64%), Gaps = 1/14 (7%)
 Frame = -2

Query: 213 TMPCGGCGDDC-KC 175
           T  C GCGD C KC
Sbjct: 33  TSYCLGCGDSCHKC 46


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = -2

Query: 201 GGCGDDCKCTINQCCQNCKCDSSCICSGKKPAPV 100
           GG G   KC  N+    C       C    P P+
Sbjct: 29  GGLGGRGKCPSNEIFSRCDGRCQRFCPNVVPKPL 62


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 10/34 (29%), Positives = 12/34 (35%)
 Frame = -2

Query: 201 GGCGDDCKCTINQCCQNCKCDSSCICSGKKPAPV 100
           GG G   KC  N+    C       C    P P+
Sbjct: 29  GGLGGRGKCPSNEIFSRCDGRCQRFCPNVVPKPL 62


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.6 bits (41), Expect = 4.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 141 DSSCICSGKKPAPVEASKKTTKS*NRLENYN 49
           DSS IC G K + V   +   +  N    YN
Sbjct: 350 DSSIICGGNKRSQVFRGRDANRQ-NSCNIYN 379


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 7/23 (30%), Positives = 10/23 (43%)
 Frame = -2

Query: 198 GCGDDCKCTINQCCQNCKCDSSC 130
           G G +C+ + N     C C   C
Sbjct: 88  GIGKECELSPNSTIAVCVCMRKC 110


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  GSLLAGFHWCWL 114
           G ++ GF  CWL
Sbjct: 12  GIIVGGFILCWL 23


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 79  GSLLAGFHWCWL 114
           G ++ GF  CWL
Sbjct: 460 GIIVGGFILCWL 471


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 114 SCRNKCTKNRIYNSDNTGLWCICNRLRNLR 203
           +CR   T   IY++D+      CN   +LR
Sbjct: 199 ACRFWPTGRGIYHNDDKTFLVWCNEEDHLR 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,720
Number of Sequences: 438
Number of extensions: 1460
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)