Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p01
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    31   0.24 
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   3.0  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    27   3.0  
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    27   4.0  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   7.0  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   9.2  
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    25   9.2  

>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 355 EDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPD 251
           +DG EL ++PE+N  +     +     N+A++HPD
Sbjct: 620 KDGWELNSSPEVNSENLLLSFLSGYITNTALLHPD 654


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 394 PPMPPSNAKEISNEDGRELFTNPEINHNHTATPNIQDL 281
           PP+ PS A+  S +      T P +N N   + +  DL
Sbjct: 705 PPLIPSEARTPSVQPANRRVTTPVVNQNTVTSDSSNDL 742


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = -2

Query: 400 VVPPMPPSNAKEISNEDGRELF-TNPEIN 317
           V+P +  SN+KEI N++   LF  NPE++
Sbjct: 491 VLPELRTSNSKEIFNDESVVLFLLNPELD 519


>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
 Frame = -2

Query: 439 PNYDPYKIKVPDIVVPPMPPSNAKEISNEDGREL---FTNPEINHNHTATPN----IQDL 281
           P+ +P     P  + PP+PPS +  ISN         F     N    +TP     I+ L
Sbjct: 189 PSVEPPTSSFP--IQPPLPPSRSISISNPQSLSFPSSFDQSNYNFQAASTPQFNPLIEHL 246

Query: 280 FRNSAIVHPDY 248
            R+++ ++P +
Sbjct: 247 RRSNSPLNPSH 257


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -2

Query: 442  PPNYDPYKIKVPDIVVPPMPPSNAKEISNEDGR 344
            PP+  P     P    PP+P S+A  + N   R
Sbjct: 1717 PPSAPPMPAGPPSAPPPPLPASSAPSVPNPGDR 1749


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 406 DIVVPPMPPSNAKEISNEDGRELFTNPEINHNHTATP 296
           D+ +P  PP+     S E G E F   ++   H A+P
Sbjct: 58  DLDLPKRPPAKTPLESAEYGYEFFRRLQLPDGHWASP 94


>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 213 SNQVKKLYQNLGTTGELSTSLPSTNPGSH 127
           + QV+  + N  +T    TS PS+NPG +
Sbjct: 78  AEQVQTSFSNPASTPLTQTSSPSSNPGKN 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,497
Number of Sequences: 5004
Number of extensions: 61930
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)