Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p01
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_02_0096 - 5248369-5248479,5248562-5248604,5249093-5249178,525...    30   1.8  
03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447           30   2.4  
07_03_1767 + 29338867-29338912,29339261-29339325,29339571-293396...    29   5.5  

>10_02_0096 -
           5248369-5248479,5248562-5248604,5249093-5249178,
           5250089-5250153,5252539-5252747,5253077-5253188,
           5253271-5253322,5254593-5254685,5254997-5255146,
           5255223-5255327,5255858-5255891,5256145-5256281,
           5257691-5257819,5257899-5257977,5258081-5258156,
           5258981-5259070,5259181-5259259,5259397-5259431,
           5260722-5260811,5260913-5261027
          Length = 629

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 129 GFQGSWKANLYLILPWYPSFGKASLLDSMFGNILS 233
           G QG W ++L +IL W P   K  LL   F +I+S
Sbjct: 204 GSQGDWDSSLKIILEWSPFSSKEELL-QQFKDIVS 237


>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
          Length = 420

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +1

Query: 34  ITTLNPVYLRSHHY*IPPQV--FQLSPTATSYPMASRVRGRQTCT 162
           +  + P  LR HH+  PP     QL P +T+ P+A+      T T
Sbjct: 225 LPVIRPAALRHHHHHPPPPPPELQLLPASTTAPLAAAFSSNSTTT 269


>07_03_1767 +
           29338867-29338912,29339261-29339325,29339571-29339642,
           29339913-29339956,29340047-29340158,29340879-29340950,
           29341449-29341511,29341957-29342034,29342110-29342202,
           29342294-29342413,29342762-29342845,29343094-29343309,
           29343401-29343448,29343761-29343871,29344170-29344267,
           29345004-29345248,29345764-29345832,29345919-29345983,
           29346168-29346337,29346434-29346512,29346614-29346869,
           29347416-29347461,29347602-29347710,29347820-29347882,
           29350075-29350107,29350924-29351442
          Length = 991

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -3

Query: 366 KYQMKTAENCLPIPRSIITTPRLQTYKTCSETL 268
           K+Q  T  N  P P +I++   LQ  K+C ETL
Sbjct: 733 KFQGGTGINLTPPPSTIMSEEALQKCKSCIETL 765


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,599,789
Number of Sequences: 37544
Number of extensions: 402875
Number of successful extensions: 1102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)