Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13p01
(779 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X84373-1|CAA59108.1| 1158|Homo sapiens nuclear factor RIP140 pro... 33 1.5
BC040361-1|AAH40361.1| 1158|Homo sapiens nuclear receptor intera... 33 1.5
AL163207-1|CAB90396.1| 1158|Homo sapiens nuclear factor protein. 33 1.5
AF248484-1|AAF62185.1| 1158|Homo sapiens nuclear factor RIP140 p... 33 1.5
AF127577-1|AAF35255.1| 1158|Homo sapiens nuclear factor RIP140 p... 33 1.5
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 32 2.0
X74955-1|CAA52910.1| 622|Homo sapiens mucin protein. 30 8.1
X74370-1|CAA52408.1| 543|Homo sapiens mucin protein. 30 8.1
>X84373-1|CAA59108.1| 1158|Homo sapiens nuclear factor RIP140
protein.
Length = 1158
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 358 NEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPDYWRGKPERMLPNIESSKEALP-KL 182
NE+ E T+P+ HN + N Q+ R S I P R P P + SSK P L
Sbjct: 509 NEENVEKNTSPQGVHNDVSKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINL 568
Query: 181 GYHGRI 164
H +
Sbjct: 569 SQHSLV 574
>BC040361-1|AAH40361.1| 1158|Homo sapiens nuclear receptor
interacting protein 1 protein.
Length = 1158
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 358 NEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPDYWRGKPERMLPNIESSKEALP-KL 182
NE+ E T+P+ HN + N Q+ R S I P R P P + SSK P L
Sbjct: 509 NEENVEKNTSPQGVHNDVSKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINL 568
Query: 181 GYHGRI 164
H +
Sbjct: 569 SQHSLV 574
>AL163207-1|CAB90396.1| 1158|Homo sapiens nuclear factor protein.
Length = 1158
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 358 NEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPDYWRGKPERMLPNIESSKEALP-KL 182
NE+ E T+P+ HN + N Q+ R S I P R P P + SSK P L
Sbjct: 509 NEENVEKNTSPQGVHNDVSKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINL 568
Query: 181 GYHGRI 164
H +
Sbjct: 569 SQHSLV 574
>AF248484-1|AAF62185.1| 1158|Homo sapiens nuclear factor RIP140
protein.
Length = 1158
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 358 NEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPDYWRGKPERMLPNIESSKEALP-KL 182
NE+ E T+P+ HN + N Q+ R S I P R P P + SSK P L
Sbjct: 509 NEENVEKNTSPQGVHNDVSKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINL 568
Query: 181 GYHGRI 164
H +
Sbjct: 569 SQHSLV 574
>AF127577-1|AAF35255.1| 1158|Homo sapiens nuclear factor RIP140
protein.
Length = 1158
Score = 32.7 bits (71), Expect = 1.5
Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Frame = -2
Query: 358 NEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPDYWRGKPERMLPNIESSKEALP-KL 182
NE+ E T+P+ HN + N Q+ R S I P R P P + SSK P L
Sbjct: 509 NEENVEKNTSPQGVHNDVSKFNTQNYARTSVIESPSTNRTTPVSTPPLLTSSKAGSPINL 568
Query: 181 GYHGRI 164
H +
Sbjct: 569 SQHSLV 574
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 32.3 bits (70), Expect = 2.0
Identities = 25/77 (32%), Positives = 35/77 (45%)
Frame = -3
Query: 351 TAENCLPIPRSIITTPRLQTYKTCSETLP*FTLTTGEESPRECCQTSNQVKKLYQNLGTT 172
TA + PIP S + T +T T P T++T P +T++ L T
Sbjct: 2936 TATSVTPIPSSTLGTTGTLPEQT---TTPVATMSTIH--PSSTPETTHTSTVLTTKATTR 2990
Query: 171 GELSTSLPSTNPGSHWI 121
STS PS+ PG+ WI
Sbjct: 2991 ATSSTSTPSSTPGTTWI 3007
>X74955-1|CAA52910.1| 622|Homo sapiens mucin protein.
Length = 622
Score = 30.3 bits (65), Expect = 8.1
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 351 TAENCLPIPRSIITTPRLQTYKTCSETLP*FTLTTGEESPRECCQTSNQVKKLYQNLGTT 172
TA + PIP S + T +T T P T++T P +T++ L TT
Sbjct: 150 TATSVTPIPSSTLGTTGTLPEQT---TTPVATMSTIH--PSSTPETTHTSTVLTTKATTT 204
Query: 171 -GELSTSLPSTNPGSHWI 121
STS PS+ PG+ WI
Sbjct: 205 RATSSTSTPSSTPGTTWI 222
>X74370-1|CAA52408.1| 543|Homo sapiens mucin protein.
Length = 543
Score = 30.3 bits (65), Expect = 8.1
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Frame = -3
Query: 351 TAENCLPIPRSIITTPRLQTYKTCSETLP*FTLTTGEESPRECCQTSNQVKKLYQNLGTT 172
TA + PIP S + T +T T P T++T P +T++ L TT
Sbjct: 101 TATSVTPIPSSTLGTTGTLPEQT---TTPVATMSTIH--PSSTPETTHTSTVLTTKATTT 155
Query: 171 -GELSTSLPSTNPGSHWI 121
STS PS+ PG+ WI
Sbjct: 156 RATSSTSTPSSTPGTTWI 173
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,536,596
Number of Sequences: 237096
Number of extensions: 2151903
Number of successful extensions: 5004
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5003
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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