Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p01
         (779 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-2810|AAF49404.2| 1734|Drosophila melanogaster CG9715-PA...    30   4.1  
AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA...    29   5.4  
AE014134-999|AAF52311.2|  381|Drosophila melanogaster CG9050-PA ...    29   7.2  

>AE014296-2810|AAF49404.2| 1734|Drosophila melanogaster CG9715-PA
           protein.
          Length = 1734

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 406 DIVVPPMPPSNAKEISNEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHPD 251
           D+V  P+PP+   E+   DG +  T+ ++ H   A          S I  P+
Sbjct: 342 DVVHVPLPPAPIIELDTSDGEQTCTSSQLFHEENAMDATDVKMGLSCITEPE 393


>AE014297-650|AAF54148.1|  358|Drosophila melanogaster CG18268-PA
           protein.
          Length = 358

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = -3

Query: 378 ATLRKYQMKTAENCLPIPRSIITTPRLQTYKTCS-ETLP*FTLTTGEESPRECCQTSNQV 202
           A L+   M+TA   L +PRS+    +  +Y+ CS + +  F     ++      Q S + 
Sbjct: 158 ADLKPQYMETANMGLTLPRSVFVPGQSVSYEICSKDGVQDFLTRLCKKISYTSQQPSAKT 217

Query: 201 KKLYQNLGTTGELSTS--LPSTNP 136
           K + Q L  + EL+ +  LP T P
Sbjct: 218 KNVTQVLSESSELNGNLRLPLTAP 241


>AE014134-999|AAF52311.2|  381|Drosophila melanogaster CG9050-PA
           protein.
          Length = 381

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 22/68 (32%), Positives = 30/68 (44%)
 Frame = -2

Query: 433 YDPYKIKVPDIVVPPMPPSNAKEISNEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHP 254
           YD  K   P    PP PP+   E  +++  +    P  N+   ATP+ Q   R S I  P
Sbjct: 302 YDDQKYVTPTAPPPPPPPAPVYEAPSQNCYQPAAPPAPNY---ATPSCQTPIRLSLIDQP 358

Query: 253 DYWRGKPE 230
             +R  PE
Sbjct: 359 --YRVAPE 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,855,459
Number of Sequences: 53049
Number of extensions: 685346
Number of successful extensions: 1858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1858
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3623012976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)