Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13p01
         (779 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical p...    29   4.9  
Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical pr...    28   6.5  
AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical ...    28   6.5  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    28   8.6  

>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
            W06A7.3f protein.
          Length = 2488

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 391  PMPPSNAKEISNEDGRELFTN--PEINHNHTATPN 293
            P PP+  K+IS+ED +    N  P  +H+H ++P+
Sbjct: 2234 PRPPTPPKDISDEDVKPSTVNLGPSHHHSHPSSPH 2268


>Z78066-7|CAE48544.1|  570|Caenorhabditis elegans Hypothetical
           protein W06A7.3d protein.
          Length = 570

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 391 PMPPSNAKEISNEDGRELFTN--PEINHNHTATPN 293
           P PP+  K+IS+ED +    N  P  +H+H ++P+
Sbjct: 320 PRPPTPPKDISDEDVKPSTVNLGPSHHHSHPSSPH 354


>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
            W06A7.3c protein.
          Length = 2484

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 391  PMPPSNAKEISNEDGRELFTN--PEINHNHTATPN 293
            P PP+  K+IS+ED +    N  P  +H+H ++P+
Sbjct: 2234 PRPPTPPKDISDEDVKPSTVNLGPSHHHSHPSSPH 2268


>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
            W06A7.3a protein.
          Length = 2607

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 391  PMPPSNAKEISNEDGRELFTN--PEINHNHTATPN 293
            P PP+  K+IS+ED +    N  P  +H+H ++P+
Sbjct: 2234 PRPPTPPKDISDEDVKPSTVNLGPSHHHSHPSSPH 2268


>Z81489-12|CAJ30224.1|  142|Caenorhabditis elegans Hypothetical
           protein C55A1.15 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +1

Query: 577 DQHVKLHDPRLRYFQQLKIRRSRFSMANIILKS*QTFFL*NTINLSHIFSCFECYIIL 750
           D+ + ++     + Q +KI    F  A+IIL   +  +L N I    +F CF  +I+L
Sbjct: 56  DKEILIYPITKHFCQMVKIFYLIFVFASIILSVFEKLYLLNVIIPVIVFFCFGLFILL 113


>Z71264-6|CAC35821.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 349 GRELFTNPEINHNHTATPNIQDLFR-NSAIVHPDYWRGKPERMLPNIESSKEALPK 185
           G +  T+  I  N   + ++  ++R N+  +  DYW  K + +LP ++    A P+
Sbjct: 181 GNKNITSSRIEQNSDYSYDVSAIWRWNNHPILADYWSSKIKEVLPKLDGVVFAAPR 236


>AL008986-1|CAC35820.1|  374|Caenorhabditis elegans Hypothetical
           protein K07G5.6 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 349 GRELFTNPEINHNHTATPNIQDLFR-NSAIVHPDYWRGKPERMLPNIESSKEALPK 185
           G +  T+  I  N   + ++  ++R N+  +  DYW  K + +LP ++    A P+
Sbjct: 181 GNKNITSSRIEQNSDYSYDVSAIWRWNNHPILADYWSSKIKEVLPKLDGVVFAAPR 236


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
           potassium channelsprotein 2 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 8/99 (8%)
 Frame = -2

Query: 409 PDIVVPPMPPS-------NAKEISNEDGRELFTNPEINHNHTATPNIQDLFRNSAIVHP- 254
           PDI+ PP PP        + K +S  D  ++ T+PE         N + + R    +H  
Sbjct: 598 PDILHPPPPPPYVPKLSLSPKRLSVIDENKISTSPE---PVLKRKNKERIARQQNPLHSF 654

Query: 253 DYWRGKPERMLPNIESSKEALPKLGYHGRIKYKFAFHEP 137
           D+    P R  P +   KE LPKL    R   K +   P
Sbjct: 655 DWLNVSPRRFRPEL-CIKEDLPKLFKLVRNSTKISLESP 692


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,932,726
Number of Sequences: 27780
Number of extensions: 351573
Number of successful extensions: 1005
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)