Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13o22
(744 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE014298-2921|AAF49010.2| 580|Drosophila melanogaster CG14230-P... 45 1e-04
AY069192-1|AAL39337.1| 734|Drosophila melanogaster GH24787p pro... 31 1.7
AE014296-1465|AAF50409.1| 734|Drosophila melanogaster CG6745-PA... 31 1.7
AY113255-1|AAM29260.1| 283|Drosophila melanogaster AT14585p pro... 30 3.8
AY095086-1|AAM11414.1| 330|Drosophila melanogaster RE56341p pro... 30 3.8
AY075545-1|AAL68352.1| 384|Drosophila melanogaster RH43215p pro... 30 3.8
AE014297-4190|AAF56755.2| 283|Drosophila melanogaster CG5017-PA... 30 3.8
AE014296-2391|AAF49733.1| 330|Drosophila melanogaster CG9238-PA... 30 3.8
AE014296-2390|AAF49732.1| 384|Drosophila melanogaster CG9238-PB... 30 3.8
BT001724-1|AAN71479.1| 568|Drosophila melanogaster RE69557p pro... 29 6.7
AE014296-3637|AAF51793.2| 568|Drosophila melanogaster CG7442-PA... 29 6.7
AY089617-1|AAL90355.1| 958|Drosophila melanogaster RE32881p pro... 29 8.8
AF267746-1|AAF82099.1| 715|Drosophila melanogaster rad21 mitoti... 29 8.8
AF186473-1|AAF01417.1| 715|Drosophila melanogaster mitotic cohe... 29 8.8
AF132146-1|AAD33593.1| 715|Drosophila melanogaster DNA repair p... 29 8.8
AF109926-1|AAD04175.1| 715|Drosophila melanogaster rad21 mitoti... 29 8.8
AE014298-1748|AAF48140.5| 1040|Drosophila melanogaster CG32656-P... 29 8.8
>AE014298-2921|AAF49010.2| 580|Drosophila melanogaster CG14230-PA
protein.
Length = 580
Score = 45.2 bits (102), Expect = 1e-04
Identities = 61/235 (25%), Positives = 95/235 (40%), Gaps = 20/235 (8%)
Frame = -2
Query: 722 EQDSQKPKPKLGMLRFDPLQPSHAKFLMQQAEDVKTEPVXXXXXXXXXXXXXXXKQEHLE 543
++D + PK K MLRFDP + H K LM+Q + + E K + +
Sbjct: 336 DKDGKSPKNKK-MLRFDPAKEGHQK-LMRQKQPKEEEE--------KKEETSSTKAKTAD 385
Query: 542 QSQENKIEVSKETFYKVSETLKETI-AQPKTFSLRSLFTKDAEQDEAPQQ-ETEYIPLD- 372
VSK FY V++TL++++ + + FSL +F E++ A +Q + E + +
Sbjct: 386 AGNSQASAVSKTAFYIVTDTLRDSLNTRGEGFSLLDMFGSAPEKEVAKRQDQLEKLGHEK 445
Query: 371 -VPKKKKGNPLDPGEKNPFIYD----XXXXXXXXXXXXXXXXSLPVPTEAKAV------- 228
+ K N L NPF YD L V E KA
Sbjct: 446 ILVGKTSANKLGLATLNPFSYDSSDSEDETEVKPKQEQEQEQELEVSKENKAQPAKKSGQ 505
Query: 227 -----WKENLFFTKQDQRLLDGLKFFNTTGDTEGQKDRRELKSLMKRRIYNKERK 78
E+ F + D RL +G KFF +T + ++K+ +K I K K
Sbjct: 506 KRNKNKLESFFIPRNDPRLKEGAKFFKSTKAVVDHAEYDQVKNRLKLLITKKIAK 560
>AY069192-1|AAL39337.1| 734|Drosophila melanogaster GH24787p
protein.
Length = 734
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 548 LEQSQENKIEVSKETFYK---VSETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETEYIP 378
L++ Q ++ + YK +S T+ + A+PK SL KDA + E Q+ +P
Sbjct: 151 LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGETSTQKDSQVP 210
Query: 377 LDVPKKKKGNPLDPG 333
+ K K PG
Sbjct: 211 AEEKKTIKVFKPKPG 225
>AE014296-1465|AAF50409.1| 734|Drosophila melanogaster CG6745-PA
protein.
Length = 734
Score = 31.1 bits (67), Expect = 1.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Frame = -2
Query: 548 LEQSQENKIEVSKETFYK---VSETLKETIAQPKTFSLRSLFTKDAEQDEAPQQETEYIP 378
L++ Q ++ + YK +S T+ + A+PK SL KDA + E Q+ +P
Sbjct: 151 LDKEQRTQVHQMIKQLYKGKLLSTTIGQQQAKPKVQEEASLENKDAAEGETSTQKDSQVP 210
Query: 377 LDVPKKKKGNPLDPG 333
+ K K PG
Sbjct: 211 AEEKKTIKVFKPKPG 225
>AY113255-1|AAM29260.1| 283|Drosophila melanogaster AT14585p
protein.
Length = 283
Score = 29.9 bits (64), Expect = 3.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 110 MKRRIYNKERKNQMFHKKIGGRRKTMKKSYRKQN 9
++R IYN E+K + H I +RK + +RKQN
Sbjct: 51 LQRDIYNIEKKYEDKHNIIFDKRKKILDEFRKQN 84
>AY095086-1|AAM11414.1| 330|Drosophila melanogaster RE56341p
protein.
Length = 330
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 234 SCLERKSILHKARSTTA 184
SCL RKS LHK+++TTA
Sbjct: 50 SCLSRKSCLHKSQNTTA 66
>AY075545-1|AAL68352.1| 384|Drosophila melanogaster RH43215p
protein.
Length = 384
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 234 SCLERKSILHKARSTTA 184
SCL RKS LHK+++TTA
Sbjct: 104 SCLSRKSCLHKSQNTTA 120
>AE014297-4190|AAF56755.2| 283|Drosophila melanogaster CG5017-PA
protein.
Length = 283
Score = 29.9 bits (64), Expect = 3.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 110 MKRRIYNKERKNQMFHKKIGGRRKTMKKSYRKQN 9
++R IYN E+K + H I +RK + +RKQN
Sbjct: 51 LQRDIYNIEKKYEDKHNIIFDKRKKILDEFRKQN 84
>AE014296-2391|AAF49733.1| 330|Drosophila melanogaster CG9238-PA,
isoform A protein.
Length = 330
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 234 SCLERKSILHKARSTTA 184
SCL RKS LHK+++TTA
Sbjct: 50 SCLSRKSCLHKSQNTTA 66
>AE014296-2390|AAF49732.1| 384|Drosophila melanogaster CG9238-PB,
isoform B protein.
Length = 384
Score = 29.9 bits (64), Expect = 3.8
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = -1
Query: 234 SCLERKSILHKARSTTA 184
SCL RKS LHK+++TTA
Sbjct: 104 SCLSRKSCLHKSQNTTA 120
>BT001724-1|AAN71479.1| 568|Drosophila melanogaster RE69557p
protein.
Length = 568
Score = 29.1 bits (62), Expect = 6.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 497 YRRFPWTLLSCSLVIVLNVLVYF 565
++ F W + +CSL +++VLVY+
Sbjct: 357 FKNFKWRIANCSLCWIVHVLVYY 379
>AE014296-3637|AAF51793.2| 568|Drosophila melanogaster CG7442-PA
protein.
Length = 568
Score = 29.1 bits (62), Expect = 6.7
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +2
Query: 497 YRRFPWTLLSCSLVIVLNVLVYF 565
++ F W + +CSL +++VLVY+
Sbjct: 357 FKNFKWRIANCSLCWIVHVLVYY 379
>AY089617-1|AAL90355.1| 958|Drosophila melanogaster RE32881p protein.
Length = 958
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 557 QEHLEQSQENKIEVSKETFYKVSETLKETIAQPKTFSLR----SLFTKDAEQDEAP--QQ 396
QE + S E K + SKE K S+ K+ ++ K + + KD + D+ P ++
Sbjct: 824 QEQKKPSSEEKEKDSKEKNDKDSKEKKDNDSKDKKDKSKEEKDNESQKDNDGDDEPSSKE 883
Query: 395 ETEYIPLDVPKKKKGNPLDPGEKNPFIYD 309
+ +Y+ + K KKG+ D + P + D
Sbjct: 884 KKQYVKDLIKKLKKGDECDEDDVYPDVRD 912
>AF267746-1|AAF82099.1| 715|Drosophila melanogaster rad21 mitotic
cohesin protein.
Length = 715
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 239 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 373
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AF186473-1|AAF01417.1| 715|Drosophila melanogaster mitotic cohesin
SCC1 protein.
Length = 715
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 239 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 373
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AF132146-1|AAD33593.1| 715|Drosophila melanogaster DNA repair
protein Rad21 protein.
Length = 715
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 239 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 373
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AF109926-1|AAD04175.1| 715|Drosophila melanogaster rad21 mitotic
cohesin protein.
Length = 715
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +2
Query: 239 LLWAQAMTQFPSRSPLLRVPNLMNHK*MDSFLQGLKDSLFSSLEH 373
LL M QF S + L P MNH+ D F QG DS + L+H
Sbjct: 514 LLSLNEMEQFSSINELPLTPRNMNHEMGDDFNQG--DSTPAGLDH 556
>AE014298-1748|AAF48140.5| 1040|Drosophila melanogaster CG32656-PA
protein.
Length = 1040
Score = 28.7 bits (61), Expect = 8.8
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -2
Query: 557 QEHLEQSQENKIEVSKETFYKVSETLKETIAQPKTFSLR----SLFTKDAEQDEAP--QQ 396
QE + S E K + SKE K S+ K+ ++ K + + KD + D+ P ++
Sbjct: 906 QEQKKPSSEEKEKDSKEKNDKDSKEKKDNDSKDKKDKSKEEKDNESQKDNDGDDEPSSKE 965
Query: 395 ETEYIPLDVPKKKKGNPLDPGEKNPFIYD 309
+ +Y+ + K KKG+ D + P + D
Sbjct: 966 KKQYVKDLIKKLKKGDECDEDDVYPDVRD 994
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,920,491
Number of Sequences: 53049
Number of extensions: 376480
Number of successful extensions: 1612
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1529
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1608
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3375989364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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