Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o21
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0735 - 27667780-27667887,27668116-27668211,27668346-276684...    29   4.4  
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526...    29   5.8  

>04_04_0735 -
           27667780-27667887,27668116-27668211,27668346-27668455,
           27668545-27668648,27669279-27669556
          Length = 231

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
 Frame = +3

Query: 375 LPSRYPIFSQRNTAQERI*IGKQ*VLLGKVTRQS*YVTIRRLHDARKGFLTLRRIH--AL 548
           LP+R    +   + +  + +G++   LGKVT  + Y T RR+ DA K  L L+ +H  A 
Sbjct: 12  LPARAGSIASPGSGRRVVPLGRRRASLGKVTAYA-YPTTRRVVDAAKSSL-LQDVHVAAS 69

Query: 549 DHSLKL 566
           + SL+L
Sbjct: 70  NPSLQL 75


>03_02_0048 -
           5265595-5265783,5265882-5265992,5266259-5266547,
           5266647-5266903,5266995-5267356,5267447-5267522,
           5267618-5267707,5267800-5267891,5267995-5268098,
           5268191-5268253,5268609-5268736
          Length = 586

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = -3

Query: 759 RGKSFAFVHGKSG*NMQKERTFGALSGVDEREKNDFK 649
           +GK  AF+HG  G   QKER     + + ++EK+D K
Sbjct: 214 KGK-LAFLHGGGGQKAQKERAAALAAILAKKEKDDSK 249


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,477,553
Number of Sequences: 37544
Number of extensions: 369860
Number of successful extensions: 813
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 813
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)