Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o17
         (803 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces pom...   168   7e-43
SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|...   130   2e-31
SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|...   125   6e-30
SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit Dpb3|Schizosa...    33   0.047
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    30   0.33 
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    27   2.4  
SPBC11B10.02c |his3||histidinol-phosphate aminotransferase imida...    26   7.2  

>SPBC11B10.10c |pht1||histone H2A variant|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 171

 Score =  168 bits (409), Expect = 7e-43
 Identities = 81/102 (79%), Positives = 94/102 (92%)
 Frame = -1

Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
           +S SARAGLQFPVGR+ R LK +T ++ RVGA +AVYSAA+LEYLTAEVLELAGNA+KDL
Sbjct: 56  MSHSARAGLQFPVGRVRRFLKAKTQNNMRVGAKSAVYSAAVLEYLTAEVLELAGNAAKDL 115

Query: 623 KVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLI 498
           KVKRITPRHLQLAIRGDEELD+LI+ATIAGGGV+PHI+K L+
Sbjct: 116 KVKRITPRHLQLAIRGDEELDTLIRATIAGGGVLPHINKQLL 157


>SPAC19G12.06c |hta2||histone H2A beta|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score =  130 bits (315), Expect = 2e-31
 Identities = 68/111 (61%), Positives = 83/111 (74%), Gaps = 1/111 (0%)
 Frame = -1

Query: 800 SRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 621
           SRSA+AGL FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K
Sbjct: 18  SRSAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNK 76

Query: 620 VKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGAP 471
             RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K+ G G P
Sbjct: 77  KTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKQSGKGKP 127


>SPCC622.08c |hta1||histone H2A alpha |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 132

 Score =  125 bits (302), Expect = 6e-30
 Identities = 66/107 (61%), Positives = 80/107 (74%), Gaps = 1/107 (0%)
 Frame = -1

Query: 800 SRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 621
           SRSA+AGL FPVGR+HR L+    +  RVGA A VY AA+LEYL AE+LELAGNA++D K
Sbjct: 18  SRSAKAGLAFPVGRVHRLLRKGNYAQ-RVGAGAPVYLAAVLEYLAAEILELAGNAARDNK 76

Query: 620 VKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 483
             RI PRHLQLAIR DEEL+ L+   TIA GGV+P+I+  L+ K  G
Sbjct: 77  KTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVVPNINAHLLPKTSG 123


>SPAC17G8.03c |dpb3||DNA polymerase epsilon subunit
           Dpb3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 199

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = -1

Query: 776 QFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 597
           +FPV RI + +       G+V     V  +  LE     +++ +   ++  + KR+T  H
Sbjct: 23  RFPVARIKK-IMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81

Query: 596 LQLAIRGDEELDSL 555
           L+ A++  E+ D L
Sbjct: 82  LKHAVQSVEQFDFL 95


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 687 RYFGISYSRGFGVGGKCV*RFKSEAYYSSALTTCY 583
           +Y G +YS G  V GKCV +F +  +     +T Y
Sbjct: 311 QYLGTNYSNGTAVDGKCVTQFDNVGFLVGTSSTRY 345


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
 Frame = +1

Query: 574 SPLIASCKCRGVIRFTFKS-LDAFPANSKTSAVRYSKIAAE*TAAVAPTRPWLVVLFLRC 750
           SPL   CKC G IR+  +  L  +  +SK +     K   E T   + + P  +   + C
Sbjct: 19  SPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFEFTKVYSESMPRTIPFTILC 78


>SPBC11B10.02c |his3||histidinol-phosphate aminotransferase
           imidazole acetol phosphate transaminase
           His3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 635 SKDLKV-KRITPRHLQLAIRGDEELDSLIKATIAGG 531
           +K+L + K +TP ++ + +  DE +DSLI+ +   G
Sbjct: 69  NKELSITKPLTPDNICMGVGSDEIIDSLIRISCIPG 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,218,399
Number of Sequences: 5004
Number of extensions: 65059
Number of successful extensions: 162
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)