Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13o17
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0433 + 3353255-3353374,3353532-3353828 195 4e-50
10_08_0018 + 14164103-14164225,14164596-14164892 190 1e-48
03_05_1090 + 30313176-30313292,30314162-30314236,30314938-303151... 151 6e-37
12_02_0605 - 20924385-20924606,20924705-20924899 135 3e-32
12_02_0151 - 14468480-14468698,14468902-14469090 130 2e-30
07_03_0790 + 21536389-21536577,21536854-21537072 130 2e-30
03_05_0949 + 29089293-29089487,29089592-29089810 130 2e-30
07_03_0791 + 21539069-21539257,21539493-21539711 129 3e-30
05_05_0119 - 22512228-22512500,22512577-22512795 124 8e-29
03_02_0562 - 9469263-9469517,9469619-9469843 120 1e-27
05_01_0107 + 706936-707202,707231-707485 103 2e-22
08_02_0735 + 20564451-20564525,20566346-20566561 80 2e-15
02_05_1354 - 35872352-35872429,35872590-35872667,35872826-35873098 31 1.4
12_02_0680 + 21903520-21904093,21904474-21905162 30 1.9
09_02_0555 - 10588685-10592038 29 3.3
07_03_1535 + 27531468-27531892,27531988-27532407,27533183-275333... 29 4.3
11_01_0426 + 3271324-3271377,3272114-3272227,3272475-3272588,327... 29 5.7
01_06_1695 + 39251266-39252390,39252852-39252983,39253560-392537... 28 7.6
08_01_0775 - 7531397-7531564,7531590-7532771 28 10.0
07_03_0635 + 20151861-20152249,20152589-20152709,20154914-201549... 28 10.0
04_03_1004 + 21637910-21638269,21638424-21638579,21640108-216402... 28 10.0
>03_01_0433 + 3353255-3353374,3353532-3353828
Length = 138
Score = 195 bits (475), Expect = 4e-50
Identities = 95/104 (91%), Positives = 100/104 (96%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
VSRS+RAGLQFPVGRIHR LK+R ++HGRVGATAAVYSAAILEYLTAEVLELAGNASKDL
Sbjct: 31 VSRSSRAGLQFPVGRIHRQLKSRASAHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 90
Query: 623 KVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 492
KVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 91 KVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 134
>10_08_0018 + 14164103-14164225,14164596-14164892
Length = 139
Score = 190 bits (462), Expect = 1e-48
Identities = 92/104 (88%), Positives = 99/104 (95%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
VSRS+RAG+QFPVGRIHR LK R +++GRVGATAAVY+AAILEYLTAEVLELAGNASKDL
Sbjct: 32 VSRSSRAGIQFPVGRIHRQLKGRVSANGRVGATAAVYTAAILEYLTAEVLELAGNASKDL 91
Query: 623 KVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGK 492
KVKRITPRHLQLAIRGDEELD+LIK TIAGGGVIPHIHKSLI K
Sbjct: 92 KVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKSLINK 135
>03_05_1090 +
30313176-30313292,30314162-30314236,30314938-30315181,
30315701-30315787,30315832-30315995,30316587-30316689,
30317751-30317908,30318025-30318105,30318192-30318344
Length = 393
Score = 151 bits (366), Expect = 6e-37
Identities = 75/83 (90%), Positives = 78/83 (93%)
Frame = -1
Query: 773 FPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 594
FPVGRIHR LK RT ++GRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 65 FPVGRIHRQLKQRTQANGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 124
Query: 593 QLAIRGDEELDSLIKATIAGGGV 525
QLAIRGDEELD+LIK TIAGG V
Sbjct: 125 QLAIRGDEELDTLIKGTIAGGVV 147
>12_02_0605 - 20924385-20924606,20924705-20924899
Length = 138
Score = 135 bits (327), Expect = 3e-32
Identities = 70/108 (64%), Positives = 86/108 (79%), Gaps = 1/108 (0%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
VSRS++AGLQFPVGRI R+LK + RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 623 KVKRITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIGKKGG 483
K RI PRH+QLA+R DEEL L+ A TIA GGV+P+IH++L+ KKGG
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGG 125
>12_02_0151 - 14468480-14468698,14468902-14469090
Length = 135
Score = 130 bits (313), Expect = 2e-30
Identities = 69/107 (64%), Positives = 82/107 (76%), Gaps = 1/107 (0%)
Frame = -1
Query: 800 SRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 621
SRS++AGLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 620 VKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 483
RI PRH+QLA+R DEEL L+ ATIA GGV+P+IH+ L+ KK G
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAG 123
>07_03_0790 + 21536389-21536577,21536854-21537072
Length = 135
Score = 130 bits (313), Expect = 2e-30
Identities = 69/107 (64%), Positives = 82/107 (76%), Gaps = 1/107 (0%)
Frame = -1
Query: 800 SRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLK 621
SRS++AGLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D K
Sbjct: 18 SRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDNK 76
Query: 620 VKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 483
RI PRH+QLA+R DEEL L+ ATIA GGV+P+IH+ L+ KK G
Sbjct: 77 KTRIVPRHIQLAVRNDEELTKLLGGATIASGGVMPNIHQHLLPKKAG 123
>03_05_0949 + 29089293-29089487,29089592-29089810
Length = 137
Score = 130 bits (313), Expect = 2e-30
Identities = 68/108 (62%), Positives = 83/108 (76%), Gaps = 1/108 (0%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
VSRS++AGLQFPVGRI R+LK + RVGA A VY +A+LEYL AEVLELAGNA++D
Sbjct: 19 VSRSSKAGLQFPVGRIARYLKAGKYAE-RVGAGAPVYLSAVLEYLAAEVLELAGNAARDN 77
Query: 623 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGG 483
K RI PRH+QLA+R DEEL L+ TIA GGV+P+I + L+ KKGG
Sbjct: 78 KKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKKGG 125
>07_03_0791 + 21539069-21539257,21539493-21539711
Length = 135
Score = 129 bits (311), Expect = 3e-30
Identities = 69/111 (62%), Positives = 82/111 (73%), Gaps = 1/111 (0%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
+SRS++AGLQFPVGRI R LK + RVGA A VY AA+LEYL AEVLELAGNA++D
Sbjct: 17 MSRSSKAGLQFPVGRIARFLKAGKYAE-RVGAGAPVYLAAVLEYLAAEVLELAGNAARDN 75
Query: 623 KVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGGPGA 474
K RI PRH+QLA+R DEEL L+ TIA GGV+P+IH L+ KK G A
Sbjct: 76 KKTRIVPRHIQLAVRNDEELSRLLGTVTIASGGVMPNIHNLLLPKKAGGSA 126
>05_05_0119 - 22512228-22512500,22512577-22512795
Length = 163
Score = 124 bits (299), Expect = 8e-29
Identities = 68/111 (61%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
VSRS +AGLQFPVGRI R+LK S R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 27 VSRSVKAGLQFPVGRIGRYLKQGRYSQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDN 85
Query: 623 KVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGGPGA 474
K RI PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK G A
Sbjct: 86 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKTGSAA 136
>03_02_0562 - 9469263-9469517,9469619-9469843
Length = 159
Score = 120 bits (289), Expect = 1e-27
Identities = 65/106 (61%), Positives = 78/106 (73%), Gaps = 1/106 (0%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDL 624
VSRS +AGLQFPVGRI R+LK + R+G A VY AA+LEYL AEVLELAGNA++D
Sbjct: 29 VSRSVKAGLQFPVGRIGRYLKKGRYAQ-RIGTGAPVYLAAVLEYLAAEVLELAGNAARDN 87
Query: 623 KVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 489
K RI PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+ KK
Sbjct: 88 KKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 133
>05_01_0107 + 706936-707202,707231-707485
Length = 173
Score = 103 bits (247), Expect = 2e-22
Identities = 66/123 (53%), Positives = 78/123 (63%), Gaps = 18/123 (14%)
Frame = -1
Query: 803 VSRSARAGLQFPVGRIHRHLKNRTTSHGRVGATAAVYSAAILEYLTAE------------ 660
VSRS +AGLQFPVGRI R+LK + RVG A VY AA+LEYL AE
Sbjct: 26 VSRSVKAGLQFPVGRIGRYLKKGRYAQ-RVGTGAPVYLAAVLEYLAAEASHCLSLPLPNP 84
Query: 659 -----VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLI 498
VLELAGNA++D K RI PRH+ LAIR DEEL L+ TIA GGV+P+I+ L+
Sbjct: 85 SKPSMVLELAGNAARDNKKNRIIPRHVLLAIRNDEELGKLLAGVTIAHGGVLPNINPVLL 144
Query: 497 GKK 489
KK
Sbjct: 145 PKK 147
>08_02_0735 + 20564451-20564525,20566346-20566561
Length = 96
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 1/67 (1%)
Frame = -1
Query: 671 LTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGGVIPHIHKSLIG 495
L+ +VLELAGNA++D K RI PRH+QLA+R DEEL L+ A TIA GGV+P+IH L+
Sbjct: 22 LSIKVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSRLLGAVTIANGGVMPNIHNLLLP 81
Query: 494 KKGGPGA 474
KK G A
Sbjct: 82 KKAGSSA 88
>02_05_1354 - 35872352-35872429,35872590-35872667,35872826-35873098
Length = 142
Score = 30.7 bits (66), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 599 HLQLAIRGDEELDSLIKATIAGGG 528
HL L + G EELD L++ I GGG
Sbjct: 37 HLSLGVGGAEELDLLLQVGIGGGG 60
>12_02_0680 + 21903520-21904093,21904474-21905162
Length = 420
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -1
Query: 746 LKNRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPR-HLQLAIRGDE 570
L +R +SHG A Y A + L GNA + + +TP HL + R D
Sbjct: 52 LHHRGSSHGESRGIRATYPQARYPPMVRLAARLWGNAEAEAGYRVLTPTPHLDMGPRADP 111
Query: 569 ELDSLIKATIAGGG 528
L +A I GG
Sbjct: 112 AL----RAAIQNGG 121
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 29.5 bits (63), Expect = 3.3
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 187 TSYIQNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYI 306
T + +N C + ++L +++Q +SPYS+H T Y+
Sbjct: 668 TLWNENRVCVPDNRELKQLILQEAHESPYSIHSGSTKMYL 707
>07_03_1535 +
27531468-27531892,27531988-27532407,27533183-27533341,
27533461-27533782
Length = 441
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/52 (36%), Positives = 23/52 (44%)
Frame = -3
Query: 657 FGVGGKCV*RFKSEAYYSSALTTCY*RR*RIGQPHKSNYRWRRRHPTHTQIS 502
F VG K + EA Y A+ T R PHKS +R P HT+ S
Sbjct: 286 FQVGKKLILNMSIEAAYQRAMNTLTSWVHREVNPHKSLVIFRTYSPAHTRAS 337
>11_01_0426 +
3271324-3271377,3272114-3272227,3272475-3272588,
3272677-3272834,3273067-3273157,3273668-3273778
Length = 213
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 602 RHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKK 489
+ + L R DEELD L + GGV IH L+G+K
Sbjct: 141 QQMLLIKRQDEELDELSASVQRIGGVGLTIHDELVGQK 178
>01_06_1695 +
39251266-39252390,39252852-39252983,39253560-39253748,
39253887-39253954,39254080-39254182,39254387-39254509
Length = 579
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -1
Query: 605 PRHLQLAIRGDEELDSLIKATIAGGGVIP 519
PRH+ + G E D L A+ AGG P
Sbjct: 174 PRHVSRVVIGSEVFDRLASASAAGGWAAP 202
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 199 QNFKCPMNKQKLSLILIQSYFKSPYSLHISITYSYI 306
+N C + ++L +++Q +SPYS+H T Y+
Sbjct: 351 ENRVCVPDDRELKQLILQEAHESPYSIHPGSTKMYL 386
>07_03_0635 +
20151861-20152249,20152589-20152709,20154914-20154996,
20155819-20155903,20155987-20156277,20156555-20156645,
20157380-20158280,20158401-20158561,20158759-20158862,
20159040-20159205,20159283-20159378,20159694-20159800,
20160443-20160775,20161393-20161599,20161774-20161857,
20162887-20163020,20163166-20163393,20163541-20163712,
20164301-20164555,20164647-20164919
Length = 1426
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 644 GNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 531
G+ ++ + +T R I+ D E+D+L+KAT+ G
Sbjct: 274 GSGARYDMLSELTRRERNAGIKPDPEIDALMKATVVEG 311
>04_03_1004 +
21637910-21638269,21638424-21638579,21640108-21640202,
21640478-21640505,21640725-21640752,21642353-21642363
Length = 225
Score = 27.9 bits (59), Expect = 10.0
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +1
Query: 529 PPPAIVAFMRLSNSSS----PLIASCKCRGVIRFTFKSLDAFPANSKTSAVRYSK 681
PPP VA R S+SSS PL+ + + +L FPA+S V +K
Sbjct: 24 PPPHSVAPKRASSSSSSTTPPLLTTRRAASAASLLLAALPPFPASSPQLPVASAK 78
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,576,165
Number of Sequences: 37544
Number of extensions: 423445
Number of successful extensions: 1092
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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