Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13o12
(805 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 33 0.036
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 30 0.44
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 29 1.0
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 28 1.4
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 3.1
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 27 3.1
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 27 3.1
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos... 26 5.5
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po... 26 5.5
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 5.5
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 26 7.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 9.5
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.5
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 9.5
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 9.5
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 9.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 9.5
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 33.5 bits (73), Expect = 0.036
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Frame = -2
Query: 543 RFKDQFESDQEDQSAIDDET--NELKSNVPQLSSNFKSKTVRFKPLVK--KKDEPSPADL 376
R + Q ES+QE +S +D+ +++ ++ ++ KS +V KP K K D P+P DL
Sbjct: 410 RRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDL 469
Query: 375 GPVVNKMLYRSL 340
+ K RSL
Sbjct: 470 VNLSEKTSNRSL 481
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
domain|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1811
Score = 29.9 bits (64), Expect = 0.44
Identities = 21/74 (28%), Positives = 39/74 (52%)
Frame = -2
Query: 549 ASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADLGP 370
+S +++ +S+ +S + DE +E S +P+ S+ KS + K L +KD S L P
Sbjct: 22 SSVVEEEPDSESTIKSRVSDEIDEHDS-IPEQSNTEKSIEINDKNLEAEKDIESNLSLRP 80
Query: 369 VVNKMLYRSLPLQQ 328
+ + RS+ +Q
Sbjct: 81 PEDDLDSRSIESEQ 94
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 1.0
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = +1
Query: 103 FNTTTNDVSIRGRCSIYRYFE 165
+ TT +D +RG C++Y+Y++
Sbjct: 167 YETTEDDYCLRGYCTVYKYYK 187
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = -2
Query: 717 ENNVVCHA-KLPNPAPFNVRADRFKSRKDDGPCAATYSPKPISCNFTK 577
E + CH K P P P N K K + C P+PI N TK
Sbjct: 255 EEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPIPHNGTK 302
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 699 HAKLPNPAPFNVRADRFKSRKDDGPCAATYSPKPISCNFTK 577
H K P P P N K K + C P+P+ N TK
Sbjct: 289 HGKFPRPIPHNGTKPDHKPWKHEEHCHHGRFPRPVPHNGTK 329
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 699 HAKLPNPAPFNVRADRFKSRKDDGPCAATYSPKPISCNFTK 577
H K P P P N K K + C P+P+ N TK
Sbjct: 177 HDKFPRPVPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTK 217
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Frame = -2
Query: 699 HAKLPNPAPFNVRADRFKSRKDDGPCAATYS--PKPISCNFTK 577
H K P P P N K K + C+ + P+P+ N TK
Sbjct: 204 HGKFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFPRPVPHNGTK 246
Score = 27.1 bits (57), Expect = 3.1
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Frame = -2
Query: 717 ENNVVCHA-KLPNPAPFNVRADRFKSRKDDGPCAATYS--PKPISCNFTK 577
E + CH K P P P N K K + C+ + P+P+ N TK
Sbjct: 226 EEHCSCHHDKFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFPRPVPHNGTK 275
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 17/41 (41%)
Frame = -2
Query: 699 HAKLPNPAPFNVRADRFKSRKDDGPCAATYSPKPISCNFTK 577
H K P P NV K K + C P+P+ N TK
Sbjct: 372 HGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTK 412
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 631 IIFSGLKSISPNIERSWVWKFCMTNNIIFNQVKISTQRV 747
I SGL+ + PNIE +WK + +Q IS Q V
Sbjct: 274 IWLSGLRIVDPNIESISLWKRIQVSTSPKHQRYISLQEV 312
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -2
Query: 552 SASRFKDQFESDQEDQSAIDDETNELK 472
SAS +++ E ++E+++ DDET E K
Sbjct: 308 SASEEEEEEEEEEEEENEADDETRENK 334
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -2
Query: 483 NELKSNVPQLSSNFKSKTVRFKPLVKKK 400
N +K+NVPQ SS++ + +PL +K+
Sbjct: 491 NTVKANVPQSSSSYTDNNKQKEPLEEKR 518
>SPBC215.03c |csn1||COP9/signalosome complex subunit
Csn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 561 FGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKS 436
+ S F+D FE++Q D ++ T K N+ QL K+
Sbjct: 60 YQSLFEEFQDCFENEQLDVEWVESVTFHRKQNLEQLRRELKA 101
>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 337
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = -2
Query: 243 PGYYDVTNYSK---KNIAVHHGPLSRSLRFKVPVDRTPAPNAYIVGGG 109
P Y+ T Y K I G L++++ V R P PNA+++ GG
Sbjct: 126 PSYHPTTLYVSRVLKRIIAVSG--MSDLKWELHVIRDPTPNAFVLPGG 171
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = -3
Query: 698 MQNFQTQLLSMLGLIDLSPEKMMALVQPLILQNQFRVILQNAQLCHLVPLQADSKINLKV 519
+QN +Q +G I S K+ PL L+NQ+ L NAQ+ + + + A ++ +
Sbjct: 399 IQNRMSQSFFSVGYIAKSTFKL----NPLRLRNQYIYFLTNAQVINYITILAVPQL-ISY 453
Query: 518 IKK 510
+KK
Sbjct: 454 VKK 456
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -2
Query: 162 KVPVDRTPAPNAYIVGGGIETI--LRSHNHRLKEN 64
KVP+D TP P I+ + T+ RS + + EN
Sbjct: 67 KVPIDTTPTPRDEILLENVRTVRKQRSSLYHISEN 101
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -2
Query: 123 IVGGGIETILRSHNHRLKENTTSHQALFSKEPAPFQLSL 7
+V G IET+ R HR N AL+SK +++ L
Sbjct: 97 LVHGEIETMKRLKGHRHIVNYIDSSALYSKSENRYEVYL 135
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 25.4 bits (53), Expect = 9.5
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +1
Query: 565 HSCAFCKITRNWFWRISGCTRAIIFSGLKSISPNIERSWVWKFCMTNN 708
H CAF +T++ + C+RA + + S +E FC NN
Sbjct: 56 HRCAFLDLTKSRGRVVHACSRAALPRAIADASHCLEEKKF--FCNVNN 101
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 564 PFGSSASRFKDQFESDQEDQ 505
PFGS SRF ++ SD E Q
Sbjct: 329 PFGSFVSRFTNRVASDLESQ 348
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -2
Query: 615 TYSPKPISCNFTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETN 481
T+SP+ + TK TAV S + S+ E+ + DE++
Sbjct: 513 TFSPEIREPSLTKKTAVSMQESKEEGRSDESSESEESGSSSDESD 557
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.4 bits (53), Expect = 9.5
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Frame = -2
Query: 519 DQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADLGPVVNKMLY--- 349
D E SA+D+ TN+ ++P S ++ T K+ P LG V++++++
Sbjct: 406 DYESISAVDENTNDSNESLPS-SHDYSEST-------KENSAPDSLLLGLVLDELVFSTT 457
Query: 348 RSLPLQQMAPFFSS 307
+ PL ++ F S
Sbjct: 458 STTPLPALSHLFPS 471
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.4 bits (53), Expect = 9.5
Identities = 24/96 (25%), Positives = 38/96 (39%)
Frame = -2
Query: 525 ESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADLGPVVNKMLYR 346
ES IDD+ +L+ + + SS + + + KK P P L V +
Sbjct: 766 ESTLWSNDGIDDKLRDLREQMSRQSSQPSTVSTILQIPDKKFHRPFPRHLHRYVGRSASE 825
Query: 345 SLPLQQMAPFFSSEGRFMPWRNWISIFGNVKTPGPG 238
SL ++ S +G I F N++ PG G
Sbjct: 826 SLTSEKDESIKSMKG--------IDDFANLEIPGKG 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,302,378
Number of Sequences: 5004
Number of extensions: 72081
Number of successful extensions: 262
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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