Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13o12
(805 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0134 - 1127794-1127889,1128005-1128196,1128336-1128425,112... 31 1.1
05_03_0356 + 12894195-12894237,12894347-12894484,12894868-128950... 31 1.4
03_05_1057 - 30005946-30006088,30006183-30006243,30006493-300065... 30 2.5
06_03_0950 - 26266755-26266917,26267273-26267652,26267742-262679... 29 5.7
02_04_0508 - 23550785-23551219,23551717-23552670 29 5.7
01_05_0141 - 18532695-18532709,18533255-18533365,18533585-185336... 29 5.7
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435... 28 10.0
09_03_0086 + 12230402-12231526 28 10.0
07_03_1398 - 26271034-26271131,26271314-26271425,26271750-262717... 28 10.0
02_05_0226 + 26971851-26972034,26972734-26972834,26972876-269729... 28 10.0
>11_01_0134 -
1127794-1127889,1128005-1128196,1128336-1128425,
1128640-1128693
Length = 143
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -2
Query: 168 RFKVPVDRTPAPNAYIVGGGIETILRSHNHRLKENTTSHQALFSKE 31
R K D P+P A ++ T+ RS ++R++E A++SK+
Sbjct: 90 RQKCMCDCKPSPYAVLLANSTGTVARSADNRVREGMAGETAVYSKQ 135
>05_03_0356 +
12894195-12894237,12894347-12894484,12894868-12895018,
12895399-12895526,12895704-12895840,12896742-12896847,
12898659-12898762,12899159-12899281,12899620-12899700,
12900159-12900304,12902171-12902243,12902970-12903060,
12904978-12905018,12906079-12906153,12906402-12906569,
12907638-12907676,12907759-12907847,12908014-12908078,
12908794-12908840,12908924-12908983,12909168-12909239,
12910143-12910172,12910526-12910617,12910719-12910802,
12911941-12912046,12912171-12912233,12912776-12912870,
12913000-12913180
Length = 875
Score = 30.7 bits (66), Expect = 1.4
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = -2
Query: 663 RADRFKSRKDDGPCAATYSPKPISCNFTKCTAVPFGSSASRFKDQFESDQEDQSAI--DD 490
R ++ K R+ DG A SP P S + K + G+ D E D ED+ + DD
Sbjct: 35 REEKRKRRELDGVGLAEESPPPGS-SLGKILSTESGAIGLEQSD--EDDMEDEHTVPGDD 91
Query: 489 ETNELKSN 466
ETN++ +N
Sbjct: 92 ETNDMINN 99
>03_05_1057 -
30005946-30006088,30006183-30006243,30006493-30006566,
30006939-30007020,30007097-30007355,30007633-30007682,
30008243-30008275
Length = 233
Score = 29.9 bits (64), Expect = 2.5
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +1
Query: 613 SGCTRAIIFSGLKSISPNIERSWVWKFCMTNNIIFNQVKISTQ 741
SG A + LKS + + SW+W C T++ +++ VK TQ
Sbjct: 77 SGFETATVADILKSKGKSADGSWLW--CTTDDSVYDAVKSMTQ 117
>06_03_0950 -
26266755-26266917,26267273-26267652,26267742-26267972,
26268247-26268419,26268549-26268693
Length = 363
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 660 ADRFKSRKDDGPCAATYSPKPISCNFTKCTAVPFGSSASRFKDQFESD 517
A+R + + D AAT++P C F A P+G AS K + +D
Sbjct: 65 AERLRLFEADLFDAATFAPAIAGCQFVFLIATPYGLEASNSKYKNTAD 112
>02_04_0508 - 23550785-23551219,23551717-23552670
Length = 462
Score = 28.7 bits (61), Expect = 5.7
Identities = 18/79 (22%), Positives = 32/79 (40%)
Frame = -2
Query: 258 VKTPGPGYYDVTNYSKKNIAVHHGPLSRSLRFKVPVDRTPAPNAYIVGGGIETILRSHNH 79
++ P PG + + + + GPL + AP + GG+ ++ S
Sbjct: 39 LRQPPPGPWRLPVIGNLHQLMLRGPLVHRTMADLARGLDDAPLMRLQLGGVPVVVASSPD 98
Query: 78 RLKENTTSHQALFSKEPAP 22
+E T +H A F+ P P
Sbjct: 99 AAREVTCTHDAAFASRPWP 117
>01_05_0141 -
18532695-18532709,18533255-18533365,18533585-18533617,
18534011-18534140,18534219-18535660,18535990-18536358
Length = 699
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/42 (26%), Positives = 25/42 (59%)
Frame = -2
Query: 543 RFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFK 418
R + ++D+ED +ID+ NE+ + ++S + + +RF+
Sbjct: 106 RKRKHMDNDEEDNDSIDERINEMINRFEEISRDRDALKLRFE 147
>11_06_0066 -
19741883-19742263,19743001-19743231,19743378-19743530,
19743667-19743726,19743806-19743874,19744639-19744719,
19744818-19744920,19745392-19745534,19745621-19745683,
19745803-19745870,19745974-19746055,19746147-19746260,
19746362-19746570,19746647-19746818
Length = 642
Score = 27.9 bits (59), Expect = 10.0
Identities = 21/81 (25%), Positives = 34/81 (41%)
Frame = -2
Query: 555 SSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSSNFKSKTVRFKPLVKKKDEPSPADL 376
S+ S DQF + +S + E + +N+ SK V F P+ + + DL
Sbjct: 425 SNTSISPDQFTDSIQFESLKTPTSKERPAEFVASRANY-SKDVEFSPIPENLGTVADEDL 483
Query: 375 GPVVNKMLYRSLPLQQMAPFF 313
+NK L + +M P F
Sbjct: 484 WMQLNKGCVTDLEMLEMTPGF 504
>09_03_0086 + 12230402-12231526
Length = 374
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/77 (22%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -2
Query: 585 FTKCTAVPFGSSASRFKDQFESDQEDQSAIDDETNELKSNVPQLSS--NFKSKTVRFKPL 412
F+K V GS + +D + ++E + DDE + + P ++ + ++ K L
Sbjct: 239 FSKWLMVLEGSEETPEQDSGDDEEEPEREDDDECSNAPPSAPPANALLLMRCRSAPAKGL 298
Query: 411 VKKKDEPSPADLGPVVN 361
+++ E P +G V+
Sbjct: 299 ARRRTEEPPPPVGEAVH 315
>07_03_1398 -
26271034-26271131,26271314-26271425,26271750-26271793,
26272158-26272485,26272569-26272982
Length = 331
Score = 27.9 bits (59), Expect = 10.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 537 KDQFESDQEDQSAIDDETNELKSNVPQLSSN 445
++QFE ++E+ +A DD + N P LS N
Sbjct: 224 ENQFEEEEENIAAADDSEEDGLKNEPVLSKN 254
>02_05_0226 + 26971851-26972034,26972734-26972834,26972876-26972978,
26973335-26973477,26973525-26973605,26973929-26974015,
26974097-26974239,26974746-26974896,26974973-26975095,
26975362-26975445,26975531-26975718,26976726-26976900,
26977008-26977129,26977231-26977310,26977532-26977590,
26977921-26978075,26978680-26978858,26980050-26980162,
26980243-26980413,26980552-26980680,26980756-26980856,
26980942-26981059,26981739-26981818,26983230-26983302,
26983865-26983950,26984025-26984076,26984221-26984352,
26984560-26984628,26984912-26985004,26985806-26985901,
26986710-26986808,26986894-26986986,26987459-26987608,
26988391-26988549
Length = 1323
Score = 27.9 bits (59), Expect = 10.0
Identities = 17/78 (21%), Positives = 35/78 (44%)
Frame = -2
Query: 264 GNVKTPGPGYYDVTNYSKKNIAVHHGPLSRSLRFKVPVDRTPAPNAYIVGGGIETILRSH 85
G+V Y V+++SKK+ H P S S+ + +P + V G ++I
Sbjct: 1032 GSVLVGSITYGAVSSFSKKDDQNQHAPASYSISYLIPPSKVDNDKEKGVSSGRKSISERL 1091
Query: 84 NHRLKENTTSHQALFSKE 31
+ +++ + F++E
Sbjct: 1092 DDEVRDTKIKFLSGFNQE 1109
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,942,631
Number of Sequences: 37544
Number of extensions: 458988
Number of successful extensions: 1096
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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