Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13o11
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 110 2e-25
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.25
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi... 28 1.3
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 27 3.0
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 27 4.0
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 26 5.3
SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr 1|... 26 7.0
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 7.0
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 9.3
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 110 bits (265), Expect = 2e-25
Identities = 79/242 (32%), Positives = 114/242 (47%), Gaps = 10/242 (4%)
Frame = -1
Query: 762 LVRETAALSKTTSFKVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFSSELAGLG- 586
L R+ L++ S VR +G +K L + T D RD + P++G +V+ + ELAG G
Sbjct: 239 LWRQVTHLTEYASPSVRLEAGDSLKQSLSYTYTRDTRDHLMIPTKGDYVRQTLELAGFGF 298
Query: 585 --GGVAHLKTELQAQQNYEL--IEDIVLQLAGAAGVLHDMFGTEIP--DHFFLGGPTTLR 424
G + LK+E Q+ L + L L+ G LH + ++ D F LGG T+LR
Sbjct: 299 LPGDASFLKSEFWGQKAVALNSSRSVSLSLSARIGALHSLNKKQVSLCDRFMLGGSTSLR 358
Query: 423 GFQQRGVGPHSDGQATGGKVYWAAGAHVYAPLPFLRNKNGISSLFRSHFFVNAGCLA--- 253
GF + +GP + GG Y A + PLP K S FR F NAG L+
Sbjct: 359 GFSEDRIGPKDGRDSLGGTAYMAFSMSLLFPLP----KVDASKPFRLQLFANAGGLSNLT 414
Query: 252 APDNGLTNWEWANSARVSCGAGVALRLGSVARLELNYCAPLKARTNDCTAHGLQFGLGVH 73
+P+ T + +S G G+ AR ELN+ P+ D GLQFG G+
Sbjct: 415 SPNPCGTYKSILSKPCISTGLGLVYAT-PAARFELNFTLPIATTEKDIGRKGLQFGAGID 473
Query: 72 FL 67
F+
Sbjct: 474 FM 475
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.25
Identities = 25/63 (39%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +2
Query: 323 KGSGAYTCAPAAQYTFPPVACPSECGPTPRCWKPLSVVGPPRKK*SGI-SVPNMSCRTPA 499
K S A P PPV PS P P KP SV PP SG VP S P
Sbjct: 1096 KPSVAAPPVPKPSVAVPPVPAPSGAPPVP---KP-SVAAPPVPVPSGAPPVPKPSVAAPP 1151
Query: 500 APA 508
PA
Sbjct: 1152 VPA 1154
>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
Dld1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 511
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +2
Query: 233 VKPLSGAARQPAFTKKC-DRNRDEIPFLFRRKGSGAYTCAPAAQYTFPPVA 382
++ + A P K D + ++ + +G Y C PA YT P VA
Sbjct: 352 IRVIGDATLGPMLAHKAEDEGIAAVEYIAKGQGHVNYNCIPAVMYTHPEVA 402
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/77 (25%), Positives = 35/77 (45%)
Frame = +2
Query: 146 FSSSRATLPSRSATPAPHDTRAEFAHSQFVKPLSGAARQPAFTKKCDRNRDEIPFLFRRK 325
+S + + SR+A+PAP D+ F +SQ + L +++ A N P+L R
Sbjct: 69 WSGALSLASSRAASPAPSDSFPTFGYSQ-LGGLENSSKGSALFNSA--NSIGTPYLSSRN 125
Query: 326 GSGAYTCAPAAQYTFPP 376
+ A + A + P
Sbjct: 126 SNSANEASAMAFHNVSP 142
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 720 KVRESSGPQMKSILRHIVTVDHRDDAIFPSQGSWVQFSS 604
KV +GP M ++ HI+T+DH ++ + ++ F+S
Sbjct: 134 KVGFHAGPSMNNLHLHIMTLDHVSPSL-KNSAHYISFTS 171
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 566 LRWATPPPNPASSLLN 613
+RWAT PNPAS N
Sbjct: 243 VRWATTDPNPASQARN 258
>SPAC1071.02 |||TFIIH regulator |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1018
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 266 AFTKKCDRNRDEIPFLF 316
AF ++ DRN EIPF F
Sbjct: 597 AFKERNDRNEQEIPFFF 613
>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 681
Score = 25.8 bits (54), Expect = 7.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 296 DEIPFLFRRKGSGAYTCAPA 355
D+IP L RR G +YT P+
Sbjct: 172 DDIPILLRRPGLSSYTPGPS 191
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = -1
Query: 360 WAAGAHVYAPLPFL 319
WAAG+HVY +P L
Sbjct: 291 WAAGSHVYINIPSL 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,825,769
Number of Sequences: 5004
Number of extensions: 55652
Number of successful extensions: 172
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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