Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o11
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    29   0.037
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.4  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   7.4  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   9.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   9.8  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 29.5 bits (63), Expect = 0.037
 Identities = 17/72 (23%), Positives = 29/72 (40%)
 Frame = -1

Query: 363 YWAAGAHVYAPLPFLRNKNGISSLFRSHFFVNAGCLAAPDNGLTNWEWANSARVSCGAGV 184
           Y+  G++V     F+ + N  S+  +    ++      P N + NW   N  RV  G   
Sbjct: 310 YYEVGSNVPFNFKFITDANSSSTPEQFKVIIDNWIKGTPQNNVPNWVMGNHDRVRVGTRY 369

Query: 183 ALRLGSVARLEL 148
             R   +  LE+
Sbjct: 370 PGRADHMIMLEM 381


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = -1

Query: 672 IVTVDHRDDAIFPSQGSWVQFSSELAGLGGGVAHLKTELQAQQNYELIEDI 520
           +V  +  ++ +  + G+ +    E       +  L   ++A++NY L+EDI
Sbjct: 74  LVLTNPSNEVVAVALGALLSKGEESFPTARSLEKLLCNVEAEENYNLLEDI 124


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 29  TLMLLRLHNQTFYKKCTPSPNW 94
           TL  +  H++T   K  P PNW
Sbjct: 213 TLTTVPKHSKTKSPKLRPYPNW 234


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 370  STSGLPVRVRPHPS 411
            +T+ L ++VRPHP+
Sbjct: 1378 TTNSLTMKVRPHPT 1391


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 444  RGRNDQVSPSRTCRAEPLRLRRA 512
            RGRND  S   T    PL + RA
Sbjct: 1384 RGRNDDGSDRLTSPPTPLSISRA 1406


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 672 CVAISTSSEDRCSR 713
           CVAIS+  E  CSR
Sbjct: 107 CVAISSRMEYECSR 120


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 316 PKEGQRRVHVRTRRPVYLSTSGLPVRVRPH 405
           PK+      V T    Y++ SGLP   R H
Sbjct: 453 PKKNPNVYKVETVGDKYMAVSGLPEPCRCH 482


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/30 (36%), Positives = 14/30 (46%)
 Frame = +1

Query: 316 PKEGQRRVHVRTRRPVYLSTSGLPVRVRPH 405
           PK+      V T    Y++ SGLP   R H
Sbjct: 453 PKKNPNVYKVETVGDKYMAVSGLPEPCRCH 482


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 336 APLPFLRNKNGISS 295
           +PLP +RN++G+ S
Sbjct: 378 SPLPSIRNRSGLVS 391


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 697 RTAALADFEAGRLA 738
           R  ALADF++GR++
Sbjct: 490 REEALADFKSGRMS 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,218
Number of Sequences: 438
Number of extensions: 4610
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)