Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o09
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              23   2.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   2.5  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   5.7  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   7.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   10.0 

>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 428 TSMSSFNCFIKVSNSFRCLSKF 493
           +++S  N  +K++  F+C++KF
Sbjct: 105 SAISDTNVHLKITKIFQCITKF 126


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 13/54 (24%), Positives = 24/54 (44%)
 Frame = -1

Query: 738 TSTKIRPLRRTAEETENRRVQKTKATVLRVTMDRILKTVINNKIDSMIEKVRDK 577
           T  +I+   + A+E     +QK     L  T    L+    N+++ ++   RDK
Sbjct: 159 TYLEIQKXIKKAKEDVIEVIQKAHNMELEPTPGNTLRQTFENQVNRILNDARDK 212


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 550 STLAKFLTKFISDFLYHRIY 609
           ST++ +L  F+  F Y++IY
Sbjct: 211 STISFYLPLFVMVFTYYKIY 230


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 434 MSSFNCFIKVSNSFRCLSKF 493
           +S  N  IK+S  F+C  K+
Sbjct: 107 ISDANVHIKISKIFQCFMKY 126


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 491 FFEDSICCSTVDSTLNVLVLAHS 559
           F  +S+C ST  S     VLAH+
Sbjct: 628 FLNNSMCTSTTTSPDKEHVLAHN 650


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,878
Number of Sequences: 438
Number of extensions: 3697
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)