Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o06
         (762 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical pr...    31   0.89 
AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical ...    31   1.2  
U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four) in...    30   2.1  
U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four) in...    30   2.1  
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei...    29   2.7  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    29   4.8  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    29   4.8  
AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical pr...    28   8.3  
Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical p...    28   8.3  
AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z92777-6|CAE17682.1|  353|Caenorhabditis elegans Hypothetical
           protein C17H1.9 protein.
          Length = 353

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 546 FTIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEI 370
           F + +  LKD+ E++ N+D Y+  D    K       + ++K+E R   +L+  R  EI
Sbjct: 207 FNVILGLLKDMKELSENKDHYLPADLKKIKYTSDEIEKHKSKLEFRNQ-QLESSRTLEI 264


>AF040659-1|AAK39389.1|  332|Caenorhabditis elegans Hypothetical
           protein ZK484.3 protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/41 (43%), Positives = 24/41 (58%)
 Frame = -1

Query: 471 PLVFKIIKKRSPEEQAKVEARKMVKLKKQRDAEIRKALAEA 349
           P+  +I  K  P     VE ++ +  KK+RDAE RKALA A
Sbjct: 80  PVKKEIKPKNKPAPVPVVEKKRTIPSKKERDAE-RKALAAA 119


>U70852-14|AAM98014.1|  783|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform a protein.
          Length = 783

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 451 QEAQPRGASESGSTEDGQAEEAARRRNPKGPGRSRRRHLQMC 326
           +E   R  SE+      QA++ +R R      R R RH++MC
Sbjct: 37  KEQNKRNQSENAKLRKKQADKDSRERREIESLRERERHVEMC 78


>U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform b protein.
          Length = 788

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -3

Query: 451 QEAQPRGASESGSTEDGQAEEAARRRNPKGPGRSRRRHLQMC 326
           +E   R  SE+      QA++ +R R      R R RH++MC
Sbjct: 42  KEQNKRNQSENAKLRKKQADKDSRERREIESLRERERHVEMC 83


>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
           protein F54C8.3 protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 612 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDC 475
           D EP+   EP+PA  + R G  F  +++  +   E+ P  D   DC
Sbjct: 640 DEEPEPEGEPQPACDLDRVGSFFEKELS--QKALEVLPKCDETFDC 683


>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
           protein.
          Length = 1027

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -1

Query: 612 DSEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNEDPYVDC 475
           D EP+   EP+PA  + R G  F  +++  +   E+ P  D   DC
Sbjct: 640 DEEPEPEGEPQPACDLDRVGSFFEKELS--QKALEVLPKCDETFDC 683


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 501 PNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQR-DAEIRKALAEAVE 343
           PN+   ++     FK  KK+  E +AK+EA+K  + +K+R   E ++ + EA +
Sbjct: 466 PNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERAKREEQRRIEEAAK 519


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = -1

Query: 501 PNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMVKLKKQR-DAEIRKALAEAVE 343
           PN+   ++     FK  KK+  E +AK+EA+K  + +K+R   E ++ + EA +
Sbjct: 466 PNQFQEIERAQREFKNQKKQEEEIRAKLEAKKKAEQEKERAKREEQRRIEEAAK 519


>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 42  AL*KSMIFFLSTLEHQRFQRRLVYTASPRVYTFFFSL 152
           A+ +  +FFL  L  Q F+ +++Y     +Y F F +
Sbjct: 169 AVQRGFVFFLRNLTEQLFESKIIYIWLASIYIFSFGV 205


>Z82078-2|CAD54160.1|  714|Caenorhabditis elegans Hypothetical
           protein W09D6.1b protein.
          Length = 714

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 543 TIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMV 400
           T+ V  +    E++P    +VD +  V KII+KR P+ +  V+ RK +
Sbjct: 498 TVPVGDVLRKFELSPKLQSHVDFE--VRKIIRKRQPKMRWAVDLRKCI 543


>Z82078-1|CAB04944.2|  707|Caenorhabditis elegans Hypothetical
           protein W09D6.1a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 543 TIQVNPLKDLTEIAPNEDPYVDCDPLVFKIIKKRSPEEQAKVEARKMV 400
           T+ V  +    E++P    +VD +  V KII+KR P+ +  V+ RK +
Sbjct: 498 TVPVGDVLRKFELSPKLQSHVDFE--VRKIIRKRQPKMRWAVDLRKCI 543


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 243 YTLVL*RLDNCL*PYRWQLDHYNRHPYRHICKCLRRLRP 359
           Y +    L++C+ P+ W   H+NR   +  C C +   P
Sbjct: 325 YIMFFGNLNSCMNPWLWF--HFNRKQLKRACPCRKSSEP 361


>Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 609 SEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNE 493
           S P  P +P P ++ Q K DV+  Q NP +  +   P +
Sbjct: 218 SMPQSPSQPNPLVRSQSKSDVYQTQ-NPYRQDSYSQPTQ 255


>Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 609 SEPDEPLEPKPALKVQRKGDVFTIQVNPLKDLTEIAPNE 493
           S P  P +P P ++ Q K DV+  Q NP +  +   P +
Sbjct: 218 SMPQSPSQPNPLVRSQSKSDVYQTQ-NPYRQDSYSQPTQ 255


>AF125460-1|AAD12847.3|  456|Caenorhabditis elegans Hypothetical
           protein Y9D1A.1 protein.
          Length = 456

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 433 GASESGSTEDGQAEEAARRRNPKGPGRSRRRHLQM 329
           G  ESG+ ++   E   RR  P+G GR  R    M
Sbjct: 196 GERESGNVDNDLIERRRRRIGPEGSGRKDRNETTM 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,024,532
Number of Sequences: 27780
Number of extensions: 324193
Number of successful extensions: 1128
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1127
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)