Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o03
         (338 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0368 + 7840665-7841975                                           31   0.17 
12_01_0585 - 4774877-4775008,4775150-4775308,4776030-4776131,477...    27   3.8  
02_01_0313 + 2097302-2097657,2099389-2100502                           27   5.0  
06_03_0637 - 22995831-22996667,22997200-22997694                       26   6.6  
03_06_0035 - 31201115-31203646                                         26   6.6  
11_06_0217 - 21353558-21353660,21354680-21355510,21356340-213564...    26   8.7  
06_01_1118 - 9213785-9215051,9215811-9215992,9216075-9216611,921...    26   8.7  
05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425     26   8.7  

>03_02_0368 + 7840665-7841975
          Length = 436

 Score = 31.5 bits (68), Expect = 0.17
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = -3

Query: 297 ESFLARSFHLNFSVKS*WQCTTEDMSEAPKAAVTACIHSNLATQQWEDVALFPLVHHIDS 118
           ESFL R+FH +F + +     T D +   +A + A  + ++A   WE+V L    H+ + 
Sbjct: 217 ESFLNRAFHADFELDTEGDVHTADPAGRCEANLAA--YHSIAALTWEEVLLHGTKHYSEG 274

Query: 117 CNQ 109
            ++
Sbjct: 275 LSR 277


>12_01_0585 -
           4774877-4775008,4775150-4775308,4776030-4776131,
           4776480-4776485,4776655-4777008
          Length = 250

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 129 GGQEEKAPHPPIVGLQGWN 185
           GG  E   HP IVG QGW+
Sbjct: 165 GGDPECDLHPAIVGKQGWS 183


>02_01_0313 + 2097302-2097657,2099389-2100502
          Length = 489

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 122 SIWWTRGKSATSSHCWV 172
           S WW  G++A +  CWV
Sbjct: 3   SSWWWHGRAAAAVACWV 19


>06_03_0637 - 22995831-22996667,22997200-22997694
          Length = 443

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = -3

Query: 246 WQCTTEDMSEAPKAAVTACIHSN------LATQQWEDVALFPL 136
           WQC T  ++  P AAV  C  ++      L T  W + A+FP+
Sbjct: 276 WQCRTRAIAADPAAAVKLCFFASARQVLGLETGYWGN-AIFPV 317


>03_06_0035 - 31201115-31203646
          Length = 843

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 112 ITGINMVDKRKKRHILPLLGC 174
           +T I M+ K + RH++ L+GC
Sbjct: 567 LTEIQMLSKLRHRHLVSLIGC 587


>11_06_0217 -
           21353558-21353660,21354680-21355510,21356340-21356464,
           21356546-21357076,21357207-21357650,21358469-21358612
          Length = 725

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +2

Query: 140 GKSATSSHCWVARLE*IQAVTAALGASDISSVVHCHYD 253
           G+ A    C + R E +    A    +D  SV+H HYD
Sbjct: 98  GQKAADEACNIFRGEWVPDPDAPYYTNDTCSVIHEHYD 135


>06_01_1118 -
           9213785-9215051,9215811-9215992,9216075-9216611,
           9216742-9217224
          Length = 822

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
 Frame = +2

Query: 140 GKSATSSHCWVARLE*IQAVTAALGASDISSVVHCHYDLTLKFKWKD------RARKDSC 301
           G+ A    C + R E +    A    ++  SV+H HYD  +K+   D      R R DSC
Sbjct: 63  GQKAADEACNIFRGEWVPDPDAPYYTNNTCSVIHEHYD-CMKYGKPDLGFVQWRWRPDSC 121

Query: 302 -LPIFD 316
            LP  D
Sbjct: 122 DLPRLD 127


>05_04_0294 - 19901254-19902154,19904185-19905007,19906335-19906425
          Length = 604

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 38  KTSYFHCYLFTNVEALLQKHSRLF*LQESIWWTRG 142
           K SYF+ Y FT   A+L   + +  +QE++ W  G
Sbjct: 191 KRSYFNLYFFTMGLAVLLALTVVVYIQENVGWGWG 225


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,084,638
Number of Sequences: 37544
Number of extensions: 138316
Number of successful extensions: 409
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 409
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)