Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o01
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    29   0.64 
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    27   4.5  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    27   4.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    26   6.0  
SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces po...    26   7.9  
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc...    26   7.9  

>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 29.5 bits (63), Expect = 0.64
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +1

Query: 124 VEEKSQMLPALPAINYCTVHIYSSGILVIPSINLNK*Q--QTQNYDTRNVHTRNKNRI 291
           V EKS +   + A N C V++ +  ++ +P+++ +      +Q      VHTRN+  I
Sbjct: 322 VSEKSSLATTVNATNECMVNLLTDSLIGMPTLDSDPLYIISSQQLSLDAVHTRNREFI 379


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/49 (26%), Positives = 27/49 (55%)
 Frame = +3

Query: 597 TISRRAKNAFKSHFGPNIGMSNVIKIITVSAVKKAFVR*NKNIKTSIIG 743
           TI +  K       GPN+ + + +++   + +K + VR +  +K+SI+G
Sbjct: 263 TIGKNCKIGPNVVIGPNVTIGDGVRLQRCAILKSSRVRDHAWVKSSIVG 311


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
            Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 757  ACLRMPMIDVLIFLFYLTNAFFTAL 683
            ACL +PM+D  +  F LT A    L
Sbjct: 1686 ACLNLPMVDAHVKAFILTQAHMARL 1710


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 676 IILITFDIPILGPKCDLNAFF 614
           IIL+ FD P+ GP   L ++F
Sbjct: 179 IILVIFDDPVYGPSSFLTSYF 199


>SPAC1952.10c |||conserved fungal protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 808 YNCLRVYLA--YYVVIILRACLRMPMIDVLIFLF 713
           YNC R+YL   Y  + +   C+ +  I  +I+LF
Sbjct: 283 YNCARLYLGVDYGDIAVANICMLVFSIVTIIYLF 316


>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 87  YVTVALLRYYIVCRRKVADVASATGDK 167
           Y ++ +LR+YI C R  A++   T  K
Sbjct: 72  YFSIDILRFYIRCTRCAAEITFITDPK 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,772
Number of Sequences: 5004
Number of extensions: 65670
Number of successful extensions: 161
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)