Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13o01
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70210-9|CAE17897.1|  403|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z82278-4|CAB05257.2|  487|Caenorhabditis elegans Hypothetical pr...    29   5.6  
Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical...    28   7.4  

>Z70210-9|CAE17897.1|  403|Caenorhabditis elegans Hypothetical
           protein K08H2.9 protein.
          Length = 403

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -2

Query: 545 RPKRVILFWNNLIIAFVCLYFFYFSRNRLNSQT 447
           RP     FW  L I  +CLY F FS    N +T
Sbjct: 3   RPHARTRFWIFLSIFAICLYIFGFSERNYNLKT 35


>Z82278-4|CAB05257.2|  487|Caenorhabditis elegans Hypothetical
           protein M162.5 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/47 (36%), Positives = 22/47 (46%)
 Frame = -3

Query: 724 IFLFYLTNAFFTALTVIILITFDIPILGPKCDLNAFFARRLIVSSNY 584
           I  + L   FF A  +  L TF IPI+ P  D N F   R +   +Y
Sbjct: 111 ISTYGLRKVFFAAGMLTSLTTFLIPIVAP-MDFNLFLLMRFLQGMSY 156


>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = -3

Query: 691 TALTVIILITFDIPILGPKCDLNAFFARRLIVSSNYFKDCTFIIQFLRKGLN 536
           TAL  +I  TF  PI+G      A    +   SSN  K    +++FL KGLN
Sbjct: 190 TAL-FLIAATFYYPIVGSYWRYQAMKILKTHSSSNTSKGTLVLLRFLIKGLN 240


>AL031633-16|CAA21028.1|  374|Caenorhabditis elegans Hypothetical
           protein Y39A1A.16 protein.
          Length = 374

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = +3

Query: 615 KNAFKSHFGPNIGMSNVIKIITVSAVKKAFVR*NKNIKTSIIGIRRHARKIMTT*YARYT 794
           KN+FK    P + ++NVI  + + +V K   + +K ++ +I   RR   K++   +  Y 
Sbjct: 17  KNSFKILNLPLVALTNVINQLDIQSVSK-LSKTSKKMRINIKNARRKVHKLIIDNHFEYH 75

Query: 795 LKQLY 809
           + + +
Sbjct: 76  IDKFH 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,471,761
Number of Sequences: 27780
Number of extensions: 359587
Number of successful extensions: 865
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)