Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13n23
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38 |... 36 0.005
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 32 0.10
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 30 0.31
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 29 0.54
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.72
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta... 29 0.72
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 29 0.72
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 29 0.95
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 28 1.3
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 28 1.7
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 28 1.7
SPAC140.04 |||conserved fungal protein|Schizosaccharomyces pombe... 27 2.2
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 2.9
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo... 27 2.9
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom... 27 3.8
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 3.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 27 3.8
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 26 5.0
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 26 5.0
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 6.7
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 26 6.7
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 26 6.7
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 26 6.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 26 6.7
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 26 6.7
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 8.8
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 8.8
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 25 8.8
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 25 8.8
>SPBC19C2.08 |prp38||U4/U6 x U5 tri-snRNP complex subunit Prp38
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 36.3 bits (80), Expect = 0.005
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = -2
Query: 735 HMDEFIDELLREERLCDIIMPRIQKRHILEQNNEIEPKISA 613
++DE +D+LL E +CDI +P ++ R LE + +EP S+
Sbjct: 145 YLDEVVDDLLNAEVVCDISLPPLRSRLQLEDLDLLEPLSSS 185
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 31.9 bits (69), Expect = 0.10
Identities = 18/49 (36%), Positives = 26/49 (53%)
Frame = -3
Query: 437 EDVIGREKKSGNARRNEKERRNVKGKRNVKERKNAKETKSVKEKRNVNE 291
+ V EK A + E++RR + K KE+K KE K KEK+ +E
Sbjct: 429 KSVESSEKDEDEAAKKEEKRRKKEAK---KEKKEKKEKKEKKEKKKKSE 474
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 30.3 bits (65), Expect = 0.31
Identities = 24/114 (21%), Positives = 48/114 (42%), Gaps = 2/114 (1%)
Frame = -3
Query: 572 KLLTPKPKRTSERKIDGTGIEREIDQETVTDVIRTEK--ENVQGAEIEDVIGREKKSGNA 399
K+LT +PK ++ + + T + + +DV T + E + + E+KS
Sbjct: 362 KVLTSEPKDSTSVEAEKTETDEPAVGKGASDVSDTAEISEKTEAKNADSEANLEEKSDVG 421
Query: 398 RRNEKERRNVKGKRNVKERKNAKETKSVKEKRNVNERRIETVNVKEIEIRTEEK 237
EKE ++ K ++ + K+TK E E ++ IE +++
Sbjct: 422 E--EKESKDENNKASLHKDVEEKDTKITNEDTGKTETDVKAKETDSIEANDKDE 473
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 29.5 bits (63), Expect = 0.54
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Frame = -3
Query: 482 DVIRTEK-ENVQGAEIEDVIGREKKSGNARRNEKERRNVKGKRNVKERKNAKETKSVKEK 306
D+I E+ E ++ E R K+ RR E+ER N + R + TKS+ ++
Sbjct: 944 DIIPEEEMERIEEEERMLAAQRAKEEERERREEEEREN---DEDHPSRTYKRTTKSITKR 1000
Query: 305 RNVNERRIETVNVKEIEI 252
+ +RR E V KEI +
Sbjct: 1001 Q---QRREEMVREKEIRL 1015
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.72
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Frame = -3
Query: 422 REKKSGNARRNEKERRNVKGKRNVKERKNAKE--TKSVKEKRNVNER-RIETVNVKEIEI 252
R+K+ ++ E+E++ K ++ K A+E + +EKR + ER R E ++ +E E
Sbjct: 659 RQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEEER 718
Query: 251 RTEE 240
R E
Sbjct: 719 RRRE 722
>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 450
Score = 29.1 bits (62), Expect = 0.72
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = -3
Query: 425 GREKKSGNARRNEKERRNVKGKRNVKERKNAKETKSVKEKRNVNER 288
G+ + + + EK + ++G + KE++N KE K K+K++ E+
Sbjct: 223 GKPSQEASVKSVEKAPKGLEGAK--KEKQNKKEKKDKKDKKDKKEK 266
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 29.1 bits (62), Expect = 0.72
Identities = 17/75 (22%), Positives = 40/75 (53%)
Frame = -3
Query: 464 KENVQGAEIEDVIGREKKSGNARRNEKERRNVKGKRNVKERKNAKETKSVKEKRNVNERR 285
+ ++ GA ++++ G+ ++ N+ ++R + K++ KE+ + K K K ++NE
Sbjct: 4 ESDLDGASMDELAGKSYEALLYLMNKNKKRKPE-KKDDKEKSSKKVQKKNKVIESLNEME 62
Query: 284 IETVNVKEIEIRTEE 240
+E + E E +E
Sbjct: 63 VEMEDENENENDEQE 77
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 28.7 bits (61), Expect = 0.95
Identities = 24/70 (34%), Positives = 31/70 (44%)
Frame = +3
Query: 216 LFSYHHVFLFGPYLYLFDVHGLYPSLVHVPFLFHALCLFRVLSLFHVPFPFHVPSLFLVP 395
LF Y FLF ++Y G++ L + + LCL FHV F HV F
Sbjct: 305 LFPYTEFFLF--FVYPVKA-GIFMPLDFIAE--YVLCLLNYEKKFHVAFDAHVSGTFF-- 357
Query: 396 SRVPALFLSP 425
V +LFL P
Sbjct: 358 GVVSSLFLLP 367
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = -3
Query: 335 AKETKSVKEKRNVNERRIETVNVKEIEIRTEEKDM 231
++ K KE RN+ E+ I +++E + E+KD+
Sbjct: 184 SRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDL 218
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.9 bits (59), Expect = 1.7
Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -3
Query: 395 RNEKERRNVKGKRNVK--ERKNAKETKSVKEKRNVNERRIETVN 270
+ E ++ ++K + + K E +N E ++ KRNVN+ +E+++
Sbjct: 57 QKELQKESIKDESSAKSSETENVLEFATLDSKRNVNDTEVESMD 100
>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1205
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Frame = -3
Query: 419 EKKSGNARRNEKERR-NVKGK--RNVKERKNAKETKSVKEKRNVNERRIETVNVKEIEIR 249
+KKS R+NEK R+ N + RNV ER +++ + ++ + E ++ +E EI
Sbjct: 1137 DKKSSRRRKNEKRRKLNEQNPNIRNVPERSSSR-FQGIRINYSEAPSSSEEISEEEEEIS 1195
Query: 248 TEEKD 234
E+ D
Sbjct: 1196 EEDFD 1200
>SPAC140.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 295
Score = 27.5 bits (58), Expect = 2.2
Identities = 18/78 (23%), Positives = 41/78 (52%)
Frame = -3
Query: 512 EREIDQETVTDVIRTEKENVQGAEIEDVIGREKKSGNARRNEKERRNVKGKRNVKERKNA 333
+R+I + TD + +N + + + ++ +++KS N++ + N+ KR +ERK
Sbjct: 34 KRKISHQKYTDKLLEANDN-ETTKRKLLVKQKRKS-----NKEFQSNIIKKRKDEERKGT 87
Query: 332 KETKSVKEKRNVNERRIE 279
+T+ E+ + R+E
Sbjct: 88 LKTEQANEEELLQRSRLE 105
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.1 bits (57), Expect = 2.9
Identities = 8/18 (44%), Positives = 16/18 (88%)
Frame = -2
Query: 699 ERLCDIIMPRIQKRHILE 646
E+LC+++M +QK+HI++
Sbjct: 782 EKLCEVVMEVLQKQHIVQ 799
>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 566
Score = 27.1 bits (57), Expect = 2.9
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 6/99 (6%)
Frame = -3
Query: 542 SERKIDGTGIEREIDQETVTDVIRTEKENV--QGAEIEDV-IGREKKSGNARRNEKERRN 372
S+RKIDGTG E + TD I K++ G + +DV R N +R
Sbjct: 91 SDRKIDGTGSSAEGGDGSGTDSISVIKKSFFKSGRKKKDVPKSRNVSRSNGADTSVQREK 150
Query: 371 VKG--KRNVKERKNAKETKSVKEK-RNVNERRIETVNVK 264
+K + KE++ A K+V + R + I+ +V+
Sbjct: 151 LKDIFSPHGKEKELAHIKKTVATRARTYSSNSIKICDVE 189
>SPBC354.13 |rga6||GTPase activating protein
Rga6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 733
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +3
Query: 285 PSLVHVPFLFHALCLFRVLSLFHVPFPFHVPSLFLVPSRVPALFLSPYHVFYLCSLNVLF 464
PSL+ +P +F F L+ HVP F + V + F SP H F+L + +F
Sbjct: 327 PSLL-LPHIFAQCVHFLSLNALHVPGIFRISGSGPVIKAITEYFYSPPH-FWLDETSEIF 384
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/69 (21%), Positives = 29/69 (42%)
Frame = -3
Query: 509 REIDQETVTDVIRTEKENVQGAEIEDVIGREKKSGNARRNEKERRNVKGKRNVKERKNAK 330
++ +Q + R EKE + ++ +K R ++ N+K +R K+ K K
Sbjct: 163 KDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEKKAMLMRQQRREENLKKRRESKKSKKGK 222
Query: 329 ETKSVKEKR 303
K K +
Sbjct: 223 APKKKKPSK 231
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -3
Query: 425 GREKKSGNARRNEKERRNVKGKRNVKERKNAKETKSVKEKRNVNERRIETVNVKEIEIRT 246
G+EKK R E+ R + +R +E++ + + EK+ + +I +KE+E
Sbjct: 75 GKEKKLQKQRAQEERIRQKEAERLKREKERQQREQ---EKKLREQEKIAAKKMKELEKLE 131
Query: 245 EEK 237
+E+
Sbjct: 132 KER 134
Score = 26.2 bits (55), Expect = 5.0
Identities = 16/93 (17%), Positives = 42/93 (45%)
Frame = -3
Query: 539 ERKIDGTGIEREIDQETVTDVIRTEKENVQGAEIEDVIGREKKSGNARRNEKERRNVKGK 360
E+K+ + E ++ + ++ EKE Q + + + +EK + + ++ + +
Sbjct: 77 EKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIR 136
Query: 359 RNVKERKNAKETKSVKEKRNVNERRIETVNVKE 261
++R+ + + ++EK R E + KE
Sbjct: 137 LQEQQRRKEERDQKLREKEEAQRLRQEQILNKE 169
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 26.2 bits (55), Expect = 5.0
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -3
Query: 482 DVIRTEKENVQGAEIEDVIGREKKSGNARRNEKERRNVKGKRNVKERK 339
DVI KEN++ + KS + EKE ++ +R ERK
Sbjct: 14 DVIEQSKENIEPRKAGHSASALAKSSSRNHTEKEVAGLQKERMGHERK 61
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 5.0
Identities = 17/72 (23%), Positives = 33/72 (45%)
Frame = -3
Query: 518 GIEREIDQETVTDVIRTEKENVQGAEIEDVIGREKKSGNARRNEKERRNVKGKRNVKERK 339
G + +ID D + +++ +ED REK + R++ +E++ K V+E+
Sbjct: 461 GDDIDIDDIAQVDNGSEDLGSIENKTVEDTGNREKSKKSLRKDIREKKR-KIDEYVEEKY 519
Query: 338 NAKETKSVKEKR 303
E VK +
Sbjct: 520 GVPEAVIVKNSK 531
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 6.7
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 3/92 (3%)
Frame = -3
Query: 557 KPKRTSERKIDGTGIE---REIDQETVTDVIRTEKENVQGAEIEDVIGREKKSGNARRNE 387
K + S+ +D + E E D E T + E EN++ + + +E+K+ + +
Sbjct: 140 KTESNSQESVDSSNSESSDEESDSEDETQQLLRELENIKQERKREQMLQEEKNRALEQEK 199
Query: 386 KERRNVKGKRNVKERKNAKETKSVKEKRNVNE 291
+ER G E N + S + KR +E
Sbjct: 200 REREIAFG----NELLNKASSGSFQVKRRWDE 227
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +3
Query: 405 PALFLSPYHVFYLCSLNVLFFCPYHVCHGLLIYLSFYPCPV 527
PAL L+P +FYL S F+ P G ++ L+ + C V
Sbjct: 164 PALRLAPSKLFYLASRFAFFYMPKEKELGTVL-LNAFLCEV 203
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.8 bits (54), Expect = 6.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = -3
Query: 662 NVIFWSRITKSSPKFRLWMMI 600
N++FWS+ + S+ F W+++
Sbjct: 419 NMVFWSKSSSSTVPFSSWLLL 439
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 114 FSVFMILIQISFSAYCY 164
FS+F++ ISF A CY
Sbjct: 98 FSIFLLFFAISFQAECY 114
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.8 bits (54), Expect = 6.7
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +3
Query: 306 FLFHALCLFRVLSLFHVPFPFHVPSLFLVPSRVPALFLSPYHVFYLCSLNVLFFCPYHVC 485
+L L FR+LS ++ FH+ ++F++ + L V + + C Y
Sbjct: 1247 YLGTQLPFFRMLSFYYAHAGFHLNNVFIM---ISMQLLMLVFVNLGAMYHTVEICDYQA- 1302
Query: 486 HGLLIYLSFYPCPVYLSLACSLWLR 560
G I S YP Y+ W+R
Sbjct: 1303 -GAAINASLYPPGCYMLKPVLDWIR 1326
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 25.8 bits (54), Expect = 6.7
Identities = 16/74 (21%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Frame = -3
Query: 437 EDVIGREKKSGNARRNEKERRNVKGKRNVKERKNAKET------KSVKEKRNVNERRIET 276
+D+I + K + +N + +K ++RK +K++ + +EKR + + + +
Sbjct: 37 QDLILKAKTKKHFYKNVRPEEYIKKGSGERKRKFSKKSHLQELYERSEEKRRIQQEKEDA 96
Query: 275 VNVKEIEIRTEEKD 234
K +EI ++KD
Sbjct: 97 KVQKRLEIEKKQKD 110
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 25.4 bits (53), Expect = 8.8
Identities = 21/100 (21%), Positives = 46/100 (46%)
Frame = -3
Query: 533 KIDGTGIEREIDQETVTDVIRTEKENVQGAEIEDVIGREKKSGNARRNEKERRNVKGKRN 354
K +G+ ++ + ++T+ D E + E ++ +K+ ARR + + K +
Sbjct: 214 KAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSAQNSAKLE-- 271
Query: 353 VKERKNAKETKSVKEKRNVNERRIETVNVKEIEIRTEEKD 234
KE+ K+ +E+ V+++ + EIE +E D
Sbjct: 272 -KEKAKEKQKDKDQEQDTVSDKN----QIDEIEKGQKEVD 306
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 282 YPSLVHVPFLFHALCLFRVLSLFHVPFPFHVPSLFLVPS 398
+P + FL LF + H+ FP HVP+ F++ S
Sbjct: 319 FPEIFKRHFLNRKRWLFPSIPPSHLSFPIHVPN-FMITS 356
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/46 (26%), Positives = 24/46 (52%)
Frame = -3
Query: 443 EIEDVIGREKKSGNARRNEKERRNVKGKRNVKERKNAKETKSVKEK 306
E+E+ G E+ + + KE +N+K K K++K + ++ K
Sbjct: 56 EVEEANGVEEAAETIESDTKEVQNIKPKSKKKKKKLNDSSDDIEGK 101
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -3
Query: 404 NARRNEKERRNVKGKRNVKERKNAKETKSVKEKRNVNERRIET-VNVKEIEIRTEE 240
N R E E+R ++ + + E E ++++ K ++NE I T VK + R +E
Sbjct: 34 NDFRVEFEKRRIEARNRILE----SEGRALENKTHLNEEEIRTNERVKRFQRRVDE 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,150,195
Number of Sequences: 5004
Number of extensions: 45152
Number of successful extensions: 234
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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