Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13n23
(757 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 25 0.58
DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex det... 24 1.8
DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex det... 24 1.8
DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex det... 23 4.1
DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex det... 23 4.1
DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex det... 23 4.1
DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex det... 23 4.1
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 23 4.1
DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex det... 23 4.1
DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex det... 23 4.1
DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex det... 23 4.1
DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex det... 23 4.1
AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 23 4.1
AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex det... 23 4.1
DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex det... 22 5.4
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 22 5.4
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 25.4 bits (53), Expect = 0.58
Identities = 10/22 (45%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 612 EPKFWARFRYSAPKY-DVSVSS 674
E +FW R RY+ P D+S+ S
Sbjct: 1193 EKRFWERLRYAIPSAGDISIES 1214
>DQ325089-1|ABD14103.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 422 REKKSGNARRNEKERRNVKGKRNV-KERKNAKETKSVKEKR 303
R + N+R E+E+ + K +R K R+ +KE + +R
Sbjct: 32 RTNRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRTER 72
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 91 NNNYKYNYNNNNY 103
>DQ325088-1|ABD14102.1| 185|Apis mellifera complementary sex
determiner protein.
Length = 185
Score = 23.8 bits (49), Expect = 1.8
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -3
Query: 422 REKKSGNARRNEKERRNVKGKRNV-KERKNAKETKSVKEKR 303
R + N+R E+E+ + K +R K R+ +KE + +R
Sbjct: 32 RTNRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRAER 72
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 91 NNNYKYNYNNNNY 103
>DQ325087-1|ABD14101.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 92 NNNYKYNYNNNNY 104
>DQ325086-1|ABD14100.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 92 NNNYKYNYNNNNY 104
>DQ325085-1|ABD14099.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 92 NNNYKYNYNNNNY 104
>DQ325084-1|ABD14098.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 92 NNNYKYNYNNNNY 104
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 177 NKNYTYNYSNVF 212
N NY YNY+N +
Sbjct: 93 NNNYKYNYNNKY 104
>DQ325081-1|ABD14095.1| 186|Apis mellifera complementary sex
determiner protein.
Length = 186
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 93 NNNYKYNYNNNNY 105
>DQ325080-1|ABD14094.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 93 NNNYKYNYNNNNY 105
>DQ325079-1|ABD14093.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 93 NNNYKYNYNNNNY 105
>DQ325078-1|ABD14092.1| 184|Apis mellifera complementary sex
determiner protein.
Length = 184
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 93 NNNYKYNYNNNNY 105
>AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex
determiner protein.
Length = 425
Score = 22.6 bits (46), Expect = 4.1
Identities = 7/17 (41%), Positives = 10/17 (58%)
Frame = +3
Query: 177 NKNYTYNYSNVFYLFSY 227
N NY NY ++Y +Y
Sbjct: 341 NNNYNNNYKKLYYNINY 357
>AY350617-1|AAQ57659.1| 428|Apis mellifera complementary sex
determiner protein.
Length = 428
Score = 22.6 bits (46), Expect = 4.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Frame = +3
Query: 177 NKNYTYNYSNVFY 215
N NY YNY+N Y
Sbjct: 326 NNNYKYNYNNNNY 338
>DQ325082-1|ABD14096.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 177 NKNYTYNYSN 206
N NY YNY+N
Sbjct: 93 NNNYKYNYNN 102
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 22.2 bits (45), Expect = 5.4
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +3
Query: 177 NKNYTYNYSN 206
N NY YNY+N
Sbjct: 326 NNNYKYNYNN 335
Score = 21.4 bits (43), Expect = 9.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = +3
Query: 174 LNKNYTYNYSNVFYLFSYHHVFLF 245
L+ NY YN +N Y ++ ++ L+
Sbjct: 318 LSNNYNYNNNNYKYNYNNYNKKLY 341
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,324
Number of Sequences: 438
Number of extensions: 3375
Number of successful extensions: 30
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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