Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13n22
(773 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein. 25 1.0
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 23 2.4
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 22 7.3
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 22 7.3
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 22 7.3
AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein. 21 9.6
AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein. 21 9.6
AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein. 21 9.6
AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein. 21 9.6
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 21 9.6
AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein. 21 9.6
AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein. 21 9.6
AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex det... 21 9.6
AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropi... 21 9.6
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 9.6
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 21 9.6
>AB022907-1|BAA86908.1| 615|Apis mellifera glucose oxidase protein.
Length = 615
Score = 24.6 bits (51), Expect = 1.0
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 14 ILGGLRSLTTYWRENLLEGGPLEDTMS*NIENNVDLMVANTLPDAGITSGLSSCETSRGG 193
++ G S + W+ LLE GP ++ I +N+ L + L T+ S S GG
Sbjct: 82 VVAGRLSEVSNWKVLLLEAGP-DEPAGAEIPSNLQLYLGGDLDWKYYTTNESHACLSTGG 140
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 772 PGPKLILXNXCXDLYKSAENITKXVKSSVTR 680
P P L L C DL S E + VKS V R
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLR 470
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.4 bits (48), Expect = 2.4
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = -2
Query: 772 PGPKLILXNXCXDLYKSAENITKXVKSSVTR 680
P P L L C DL S E + VKS V R
Sbjct: 440 PLPPLPLHTECEDLSVSGEAGIEEVKSPVLR 470
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 413 SSDFDFLNFSICLALSVVMTVTASC 487
S++F ++ S + S+ +T+TASC
Sbjct: 114 SNEFIRIHHSGSITRSIRLTITASC 138
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 413 SSDFDFLNFSICLALSVVMTVTASC 487
S++F ++ S + S+ +T+TASC
Sbjct: 114 SNEFIRIHHSGSITRSIRLTITASC 138
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.8 bits (44), Expect = 7.3
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +2
Query: 413 SSDFDFLNFSICLALSVVMTVTASC 487
S++F ++ S + S+ +T+TASC
Sbjct: 53 SNEFIRIHHSGSITRSIRLTITASC 77
>AY569719-1|AAS86672.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AY569718-1|AAS86671.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AY569715-1|AAS86668.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AY569714-1|AAS86667.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AY569711-1|AAS86664.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AY569702-1|AAS86655.1| 400|Apis mellifera feminizer protein.
Length = 400
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AY350616-1|AAQ57658.1| 401|Apis mellifera complementary sex
determiner protein.
Length = 401
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -3
Query: 465 TTESAKQIEKFRKSKSDD 412
TT + E+FR+S+S+D
Sbjct: 5 TTNHSHHDERFRQSRSED 22
>AJ780964-1|CAG62942.2| 332|Apis mellifera putative corticotropin
releasing hormone-binding protein protein.
Length = 332
Score = 21.4 bits (43), Expect = 9.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 149 GITSGLSSCETSRGGVGTSCGELRPLSRELI 241
G+++ LSS T+ G C E P + +I
Sbjct: 235 GVSNFLSSTRTAETGTIRKCDESSPHDQVII 265
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.4 bits (43), Expect = 9.6
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = -1
Query: 605 TTLAAIITNVTTGRSTPS 552
T + ++TNVTT +TP+
Sbjct: 826 TEQSVVVTNVTTTINTPT 843
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 21.4 bits (43), Expect = 9.6
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +2
Query: 128 ANTLPDAGITSGLSSCETSRGGVGTSCGELRPLSRELIIETLEPTLST 271
+ +LP + SG+S E+S G L +R +L+P+L++
Sbjct: 238 SGSLPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLAS 285
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,871
Number of Sequences: 438
Number of extensions: 2297
Number of successful extensions: 20
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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