Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13n20
(709 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC000272-1|AAH00272.1| 737|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 32 1.7
AL359844-2|CAH72376.1| 737|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 32 1.7
AK223297-1|BAD97017.1| 363|Homo sapiens nucleolar protein GU2 v... 32 1.7
AK056044-1|BAB71082.1| 189|Homo sapiens protein ( Homo sapiens ... 32 1.7
AF334103-1|AAK29402.1| 737|Homo sapiens nucleolar protein GU2 p... 32 1.7
BC113381-1|AAI13382.1| 1401|Homo sapiens ubiquitously transcribe... 30 9.3
BC093868-1|AAH93868.1| 1401|Homo sapiens ubiquitously transcribe... 30 9.3
AL138744-1|CAI41479.1| 1401|Homo sapiens ubiquitously transcribe... 30 9.3
AL133545-2|CAI40508.1| 1401|Homo sapiens ubiquitously transcribe... 30 9.3
AF000993-1|AAC51840.1| 1401|Homo sapiens ubiquitous TPR motif, X... 30 9.3
AF000992-1|AAC51839.1| 1401|Homo sapiens ubiquitous TPR motif, X... 30 9.3
AB208795-1|BAD92032.1| 1406|Homo sapiens ubiquitously transcribe... 30 9.3
>BC000272-1|AAH00272.1| 737|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 50 protein.
Length = 737
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -2
Query: 519 SEEIIKLDIRGQGVPKLQFPVQKIIFGPPPEGSTLM 412
SEE IKL ++G+GV L FP+Q FGP EG L+
Sbjct: 145 SEETIKL-LKGRGVTYL-FPIQVKTFGPVYEGKDLI 178
>AL359844-2|CAH72376.1| 737|Homo sapiens DEAD (Asp-Glu-Ala-Asp) box
polypeptide 50 protein.
Length = 737
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -2
Query: 519 SEEIIKLDIRGQGVPKLQFPVQKIIFGPPPEGSTLM 412
SEE IKL ++G+GV L FP+Q FGP EG L+
Sbjct: 145 SEETIKL-LKGRGVTYL-FPIQVKTFGPVYEGKDLI 178
>AK223297-1|BAD97017.1| 363|Homo sapiens nucleolar protein GU2
variant protein.
Length = 363
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -2
Query: 519 SEEIIKLDIRGQGVPKLQFPVQKIIFGPPPEGSTLM 412
SEE IKL ++G+GV L FP+Q FGP EG L+
Sbjct: 145 SEETIKL-LKGRGVTYL-FPIQVKTFGPVYEGKDLI 178
>AK056044-1|BAB71082.1| 189|Homo sapiens protein ( Homo sapiens
cDNA FLJ31482 fis, clone NT2NE2001666, weakly similar to
PUTATIVE ATP-DEPENDENT RNA HELICASE YDL031W. ).
Length = 189
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -2
Query: 519 SEEIIKLDIRGQGVPKLQFPVQKIIFGPPPEGSTLM 412
SEE IKL ++G+GV L FP+Q FGP EG L+
Sbjct: 80 SEETIKL-LKGRGVTYL-FPIQVKTFGPVYEGKDLI 113
>AF334103-1|AAK29402.1| 737|Homo sapiens nucleolar protein GU2
protein.
Length = 737
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = -2
Query: 519 SEEIIKLDIRGQGVPKLQFPVQKIIFGPPPEGSTLM 412
SEE IKL ++G+GV L FP+Q FGP EG L+
Sbjct: 145 SEETIKL-LKGRGVTYL-FPIQVKTFGPVYEGKDLI 178
>BC113381-1|AAI13382.1| 1401|Homo sapiens ubiquitously transcribed
tetratricopeptide repeat, X chromosome protein.
Length = 1401
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 180 RYLSL*PPHQKGTLLLESLFVQYYHWNYFFQDLKIFQE 293
RY SL + K L L + Y+H+N F +K FQE
Sbjct: 118 RYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQE 155
>BC093868-1|AAH93868.1| 1401|Homo sapiens ubiquitously transcribed
tetratricopeptide repeat, X chromosome protein.
Length = 1401
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 180 RYLSL*PPHQKGTLLLESLFVQYYHWNYFFQDLKIFQE 293
RY SL + K L L + Y+H+N F +K FQE
Sbjct: 118 RYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQE 155
>AL138744-1|CAI41479.1| 1401|Homo sapiens ubiquitously transcribed
tetratricopeptide repeat, X chromosome protein.
Length = 1401
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 180 RYLSL*PPHQKGTLLLESLFVQYYHWNYFFQDLKIFQE 293
RY SL + K L L + Y+H+N F +K FQE
Sbjct: 118 RYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQE 155
>AL133545-2|CAI40508.1| 1401|Homo sapiens ubiquitously transcribed
tetratricopeptide repeat, X chromosome protein.
Length = 1401
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 180 RYLSL*PPHQKGTLLLESLFVQYYHWNYFFQDLKIFQE 293
RY SL + K L L + Y+H+N F +K FQE
Sbjct: 118 RYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQE 155
>AF000993-1|AAC51840.1| 1401|Homo sapiens ubiquitous TPR motif, X
isoform protein.
Length = 1401
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 180 RYLSL*PPHQKGTLLLESLFVQYYHWNYFFQDLKIFQE 293
RY SL + K L L + Y+H+N F +K FQE
Sbjct: 118 RYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQE 155
>AF000992-1|AAC51839.1| 1401|Homo sapiens ubiquitous TPR motif, X
isoform protein.
Length = 1401
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 180 RYLSL*PPHQKGTLLLESLFVQYYHWNYFFQDLKIFQE 293
RY SL + K L L + Y+H+N F +K FQE
Sbjct: 118 RYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQE 155
>AB208795-1|BAD92032.1| 1406|Homo sapiens ubiquitously transcribed
tetratricopeptide repeat variant protein.
Length = 1406
Score = 29.9 bits (64), Expect = 9.3
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 180 RYLSL*PPHQKGTLLLESLFVQYYHWNYFFQDLKIFQE 293
RY SL + K L L + Y+H+N F +K FQE
Sbjct: 123 RYYSLQSDYWKNAAFLYGLGLVYFHYNAFQWAIKAFQE 160
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,295,952
Number of Sequences: 237096
Number of extensions: 1858018
Number of successful extensions: 4204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4204
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8231208258
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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