Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13n20
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    25   0.93 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   2.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   5.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   6.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   6.6  
AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor p...    22   6.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   6.6  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 297 SAPEKSLNLEKSSSNDNIEQKDFLVEEFLFDEVVKEKDNDGKEES 163
           S P +  N EKS +N +  Q    + +   +    ++ ND KEE+
Sbjct: 51  SQPHQDHNKEKSKNNHHCNQDTEKLNQLEIESDNSKEVNDKKEEN 95


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -2

Query: 708 KERTQNVSIDSPQLQSEPYMDQSLQSENYNDSLNNQSN 595
           +ER++   I S       + + +  + NYN++ NN +N
Sbjct: 306 RERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNN 343


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -2

Query: 216 FLFDEVVKEKDNDGKEESMPQKSMPVDDGTSISTMTTEYKTI 91
           F+ DE++   DNDGK   + Q       G S+     E   +
Sbjct: 3   FIDDELLWCPDNDGKMVDLTQCLQESSTGQSVEFSPMELNAL 44


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 708 KERTQNVSIDSPQLQSEPYMDQSLQSENYNDSLNNQSN 595
           +E ++   I S    +  Y + +  + NYN++ NN  N
Sbjct: 73  RETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -2

Query: 708 KERTQNVSIDSPQLQSEPYMDQSLQSENYNDSLNNQSN 595
           +E ++   I S    +  Y + +  + NYN++ NN  N
Sbjct: 73  RETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYN 110


>AY263366-1|AAO92605.1|  139|Apis mellifera octopamine receptor
           protein.
          Length = 139

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
 Frame = +2

Query: 443 NIIFWTGNCNFG-TPC 487
           +++FW G CN    PC
Sbjct: 45  SVLFWLGYCNSAINPC 60


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/16 (43%), Positives = 10/16 (62%), Gaps = 1/16 (6%)
 Frame = +2

Query: 443 NIIFWTGNCNFG-TPC 487
           +++FW G CN    PC
Sbjct: 493 SVLFWLGYCNSAINPC 508


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,770
Number of Sequences: 438
Number of extensions: 3923
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)