Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13n17
(847 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 33 0.067
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 29 1.1
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 29 1.1
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom... 28 1.9
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa... 27 3.3
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 26 5.8
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom... 26 7.7
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch... 26 7.7
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 26 7.7
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 32.7 bits (71), Expect = 0.067
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +2
Query: 275 VYAFPN---WVMWYIRFYYALYVSTSTSHC 355
+YA+P+ W++W IR Y +YV+ S +C
Sbjct: 124 IYAYPDTGEWMVWVIRILYYIYVAVSFIYC 153
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 427 DCTLNEMKSYSDVHKVEYLACEMETMASTRGDIQCIVKSNVPHDPV 290
D L E H V ++A E++T + G + CI SNV D V
Sbjct: 226 DGYLEEAYKLCKAHNVLFIADEVQTGVARTGKMLCIEHSNVKPDVV 271
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.7 bits (61), Expect = 1.1
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 2/130 (1%)
Frame = -1
Query: 652 GVDLKRKVQLSVFYESACSDSKHFILEQLHPTIHKLEDYIDLQLIPFGKASSINNGGDGF 473
G D + QL V S+ S+ + L P + +D DL F +A S+
Sbjct: 161 GKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDL----FRQAGSVIRADIQM 216
Query: 472 ECQHGPPECFGNLIQDCTLNEMKSYSDVHKVEYLACEMETMAS--TRGDIQCIVKSNVPH 299
Q G G ++ M + +H +++ +E I+ +V PH
Sbjct: 217 N-QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKIEDLVYHAYPH 275
Query: 298 DPVRECVYLG 269
P +C+Y+G
Sbjct: 276 GPCSDCIYVG 285
>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 431
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Frame = +2
Query: 278 YAFP---NWVMWYIRFYYALYVSTSTSHCFHFTGQVFH 382
YAFP W++W IR Y ++V+ + +FH
Sbjct: 121 YAFPYTGEWMVWLIRILYWIFVAVACIFVISLFYSLFH 158
>SPAC806.08c |mod21||gamma tubulin complex subunit
Mod21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 618
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +2
Query: 293 WVMWYIRFYYALYVSTSTSHCFHFT 367
W + RFYY YV +T H F T
Sbjct: 459 WSKRFSRFYYGHYVFVNTCHNFFLT 483
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -1
Query: 175 QATQNKAFNDLMGTICDRLRNVKPCKEYF 89
+A +NKA D ICDR R V+ C E F
Sbjct: 113 EAMKNKA--DYYTNICDRERGVQLCDETF 139
>SPBC725.14 |arg6||acetylglutamate synthase Arg6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Frame = -1
Query: 322 IVKSNVPHDPVRECVYLGPGTLLQ--LDSERLTKLVNPKFIPTIVLDGVFDQATQNKA 155
I K+ V V +LGP L + ERL L+N F T+ +D D+ + A
Sbjct: 321 ITKTTVLRSGVPVYTFLGPKCLTDGSVSWERLWVLINDSFKRTLDMDAYLDRLKNSLA 378
>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 376
Score = 25.8 bits (54), Expect = 7.7
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +1
Query: 655 YRKRPKSRKYLQKTSYFLNVTTFVIR---SKFN 744
+RK+ S + + + YFLN++TF I SK+N
Sbjct: 90 FRKKNPSFEKVSELLYFLNISTFPIELVISKYN 122
>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 7.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Frame = -1
Query: 217 PKFIPTIVLDGV-FDQATQNKAFNDLMGTICDRLRNVKPCKEY 92
P P+ +L G+ FD A + LMG I R + P EY
Sbjct: 8 PYVRPSAILLGIAFDHAASFLVYGPLMGDIWKRAMSTAPHVEY 50
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,806,356
Number of Sequences: 5004
Number of extensions: 85285
Number of successful extensions: 219
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 219
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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