Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13n16
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0364 + 28304743-28304814,28305021-28305197,28307309-283074...    35   0.042
06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849     31   0.90 
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    30   1.2  
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    29   2.7  
09_03_0094 + 12315923-12316237,12316347-12317504                       27   8.4  

>02_05_0364 +
           28304743-28304814,28305021-28305197,28307309-28307431,
           28307644-28308043,28308129-28308242,28308359-28308454,
           28308598-28308791
          Length = 391

 Score = 35.1 bits (77), Expect = 0.042
 Identities = 20/74 (27%), Positives = 37/74 (50%)
 Frame = +2

Query: 125 LAHKAGTNQMKDMGRRGRTVRIETDRVHKAHSMACKTTGMVHSTGNISACKARMVQNTVR 304
           L  K      +  GR+   +R++T ++H A S+A   T +    GN  + ++    NT+ 
Sbjct: 134 LKSKLANMVQRGCGRKREDIRLQTAQMHAALSVARLATAVARMVGNCQS-ESTNANNTIM 192

Query: 305 TVHMGRYKDRKAHM 346
           T  +G+ + RK H+
Sbjct: 193 TA-IGKDEHRKMHV 205


>06_03_0953 - 26277946-26278800,26280177-26280676,26280735-26280849
          Length = 489

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +2

Query: 62  VSKTLHRGYTAHTEGSGHRAALAHKAGTNQMKD 160
           VS T       H EG  H+A LAH   +N +KD
Sbjct: 260 VSATSEGALNEHLEGKRHKAKLAHCGASNAIKD 292


>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
            21420530-21420757,21420916-21421049,21421309-21421392,
            21421554-21421760,21421871-21422203,21422343-21422449,
            21422823-21422988,21423127-21423230,21423347-21423507,
            21423595-21424495,21424642-21424732,21424837-21425127,
            21425491-21425575,21425665-21425747,21427653-21427773,
            21427785-21428260
          Length = 1422

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -3

Query: 234  VLQAILWALWTLSVSMRTVRPLRPMSFIWFVPALWANAALW 112
            +L + +  LW L      VRPL P+ + W+    WAN   W
Sbjct: 1313 ILISFVLPLWNLFAGFLVVRPLIPIWWRWY---YWANPVSW 1350


>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
            9700145-9700235,9700698-9700759,9701256-9702962,
            9703789-9703870,9703972-9704057,9704855-9704968,
            9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 56   GIWCMCISERFPNIHCE 6
            G WC  +SE+ P++HC+
Sbjct: 1182 GSWCSVVSEQSPSVHCK 1198


>09_03_0094 + 12315923-12316237,12316347-12317504
          Length = 490

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 237 VVLQAILWALWTLSVSMRTVRPLRPMSFIWFVPALWANAA 118
           V L A LWA  TL ++M     L  +     +PA++A  A
Sbjct: 90  VALGAFLWAAATLLIAMAVTAALNGVGLALQIPAIYAFVA 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,293
Number of Sequences: 37544
Number of extensions: 212853
Number of successful extensions: 722
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)