Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13n12
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc...    27   2.9  
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce...    27   3.8  
SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41 |Schizosacch...    26   5.1  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    26   5.1  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    26   5.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   6.7  
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom...    25   8.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    25   8.9  

>SPBC6B1.04 |mde4||monopolin-like complex subunit
           Mde4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 421

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +1

Query: 442 KLYTVLTLCAFIECKRSENESSYIADIQGRTKNSYKSSISPL 567
           KL   ++ C F E    ++ESS++ +    TK++ + SISPL
Sbjct: 365 KLKDTVSNCEFTE---EDSESSFLLETIQPTKSTLRRSISPL 403


>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 53  IVFNFVLESCVIR*IHFWVWHNEDWSN 133
           +VF F+  S V   I FW W+   W N
Sbjct: 154 MVFMFLWTSIVYDPIAFWTWNPNGWLN 180


>SPAC12B10.12c |rhp41|rhp4a|DNA repair protein Rhp41
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 1/94 (1%)
 Frame = -2

Query: 584 LLFRFQRGDIDDLYEFFVRP-WMSAMYEDSFSDLLHSINAQSVSTVYNLLRPKYASPEEI 408
           L FRF +G I++     + P W   M  DS SD+  S +  S        R K   P   
Sbjct: 223 LSFRF-KGAINEASSHEIVPAWSQQMENDSSSDISESAHITSRFR----KRRKIIQPSFS 277

Query: 407 SKSRVESSCSITKTCGFGQSDSPSDITFRSVIDK 306
           + S +++S  +T+       DSP  + +    +K
Sbjct: 278 NLSHLDASDIVTEDTKLKVIDSPKPVFWVEAFNK 311


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
 Frame = +1

Query: 235 PHSRGLFVHFFAAAIIWLLVFEINL--SITDRNVI 333
           PH    F   F  A+ W+LVF ++   SI  RN +
Sbjct: 213 PHFAYAFSGAFCGALSWILVFPVDTAKSIVQRNTL 247


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -2

Query: 503 DSFSDLLHSINAQSVSTVYNLLRPKYASPEEISKSRVESS 384
           D+FS  +  +N   ++ +YN  RP  A   + SKS V  S
Sbjct: 160 DNFSVRIQELNVVDIAMLYNSSRPSLAVLYKDSKSIVHLS 199


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = -2

Query: 605  HEAFFNKLLFRFQRGDIDDLYEFFVRPWMSAMYEDSFSDLLHSINAQSVSTVYNLLRPKY 426
            ++  F  L F FQ+   + +Y+F ++      +++ FS + ++I  +      +L  PK+
Sbjct: 1131 YDISFGSLTFYFQKSYFNAIYDFLLK---LKRFQELFSSIRYAIYYKLYGNKVSLTYPKF 1187


>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -3

Query: 157 SRNICSNIVRPILIMPHPKMNLSNH--T*FQDKIKNNLIIEKKSDYLPDF 14
           SR +  N+  P+  M  P +  +N   T  QD IKN++    + +Y+P+F
Sbjct: 50  SRELARNV--PVNEMVQPALGPANPFVTKEQDSIKNSITGYAEREYVPNF 97


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -1

Query: 195 EEYWRRSDCDFSHREIFAQT*FDQSSLCHTQK*IYLITHDSRTKL 61
           E +W   D D        +  F  +S  HT K  YL+ H  RTKL
Sbjct: 358 ESFWDEFDDDREWDVDERRREFPNASEEHTNKEAYLLPHLFRTKL 402


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,262,279
Number of Sequences: 5004
Number of extensions: 72724
Number of successful extensions: 239
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)