Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13n12
         (759 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC028708-1|AAH28708.2| 1237|Homo sapiens chromosome 20 open read...    80   1e-14
AL161658-2|CAI40813.1| 1173|Homo sapiens chromosome 20 open read...    80   1e-14
AL121721-1|CAI19156.1| 1173|Homo sapiens chromosome 20 open read...    80   1e-14
AL049648-2|CAI42250.1| 1173|Homo sapiens chromosome 20 open read...    80   1e-14
AL035454-3|CAI42114.1| 1173|Homo sapiens chromosome 20 open read...    80   1e-14

>BC028708-1|AAH28708.2| 1237|Homo sapiens chromosome 20 open reading
            frame 26 protein.
          Length = 1237

 Score = 79.8 bits (188), Expect = 1e-14
 Identities = 30/78 (38%), Positives = 46/78 (58%)
 Frame = -2

Query: 719  KRGNYFRLHLNSLHCIDAVSCLSTKPFSSDTLAQVYGKHEAFFNKLLFRFQRGDIDDLYE 540
            K G YFR+H+N    ++ ++CLS +PF +    +++G+HE   N L  R+    I DLY 
Sbjct: 1082 KNGTYFRIHINKYKMVETITCLSREPFPASNYIRLFGQHEQLLNNLCARYDENLITDLYS 1141

Query: 539  FFVRPWMSAMYEDSFSDL 486
            +F  PW  A++ D F DL
Sbjct: 1142 YFTEPWCLALFHDRFIDL 1159


>AL161658-2|CAI40813.1| 1173|Homo sapiens chromosome 20 open reading
            frame 26 protein.
          Length = 1173

 Score = 79.8 bits (188), Expect = 1e-14
 Identities = 30/78 (38%), Positives = 46/78 (58%)
 Frame = -2

Query: 719  KRGNYFRLHLNSLHCIDAVSCLSTKPFSSDTLAQVYGKHEAFFNKLLFRFQRGDIDDLYE 540
            K G YFR+H+N    ++ ++CLS +PF +    +++G+HE   N L  R+    I DLY 
Sbjct: 1018 KNGTYFRIHINKYKMVETITCLSREPFPASNYIRLFGQHEQLLNNLCARYDENLITDLYS 1077

Query: 539  FFVRPWMSAMYEDSFSDL 486
            +F  PW  A++ D F DL
Sbjct: 1078 YFTEPWCLALFHDRFIDL 1095


>AL121721-1|CAI19156.1| 1173|Homo sapiens chromosome 20 open reading
            frame 26 protein.
          Length = 1173

 Score = 79.8 bits (188), Expect = 1e-14
 Identities = 30/78 (38%), Positives = 46/78 (58%)
 Frame = -2

Query: 719  KRGNYFRLHLNSLHCIDAVSCLSTKPFSSDTLAQVYGKHEAFFNKLLFRFQRGDIDDLYE 540
            K G YFR+H+N    ++ ++CLS +PF +    +++G+HE   N L  R+    I DLY 
Sbjct: 1018 KNGTYFRIHINKYKMVETITCLSREPFPASNYIRLFGQHEQLLNNLCARYDENLITDLYS 1077

Query: 539  FFVRPWMSAMYEDSFSDL 486
            +F  PW  A++ D F DL
Sbjct: 1078 YFTEPWCLALFHDRFIDL 1095


>AL049648-2|CAI42250.1| 1173|Homo sapiens chromosome 20 open reading
            frame 26 protein.
          Length = 1173

 Score = 79.8 bits (188), Expect = 1e-14
 Identities = 30/78 (38%), Positives = 46/78 (58%)
 Frame = -2

Query: 719  KRGNYFRLHLNSLHCIDAVSCLSTKPFSSDTLAQVYGKHEAFFNKLLFRFQRGDIDDLYE 540
            K G YFR+H+N    ++ ++CLS +PF +    +++G+HE   N L  R+    I DLY 
Sbjct: 1018 KNGTYFRIHINKYKMVETITCLSREPFPASNYIRLFGQHEQLLNNLCARYDENLITDLYS 1077

Query: 539  FFVRPWMSAMYEDSFSDL 486
            +F  PW  A++ D F DL
Sbjct: 1078 YFTEPWCLALFHDRFIDL 1095


>AL035454-3|CAI42114.1| 1173|Homo sapiens chromosome 20 open reading
            frame 26 protein.
          Length = 1173

 Score = 79.8 bits (188), Expect = 1e-14
 Identities = 30/78 (38%), Positives = 46/78 (58%)
 Frame = -2

Query: 719  KRGNYFRLHLNSLHCIDAVSCLSTKPFSSDTLAQVYGKHEAFFNKLLFRFQRGDIDDLYE 540
            K G YFR+H+N    ++ ++CLS +PF +    +++G+HE   N L  R+    I DLY 
Sbjct: 1018 KNGTYFRIHINKYKMVETITCLSREPFPASNYIRLFGQHEQLLNNLCARYDENLITDLYS 1077

Query: 539  FFVRPWMSAMYEDSFSDL 486
            +F  PW  A++ D F DL
Sbjct: 1078 YFTEPWCLALFHDRFIDL 1095


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,602,191
Number of Sequences: 237096
Number of extensions: 2272913
Number of successful extensions: 5315
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5315
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)