Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13n02
(813 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 361 e-100
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 361 e-100
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 361 e-100
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 361 e-100
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 361 e-100
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 361 e-100
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 361 e-100
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 361 e-100
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 361 e-100
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 355 3e-98
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 340 7e-94
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 169 3e-42
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 159 2e-39
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 120 9e-28
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 108 5e-24
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 95 4e-20
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 77 2e-14
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 77 2e-14
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 48 1e-05
U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol ... 31 0.74
U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol ... 31 0.74
U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol ... 31 0.74
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ... 29 3.0
AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical ... 29 5.2
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 9.1
U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical pr... 28 9.1
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 9.1
AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical ... 28 9.1
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 361 bits (889), Expect = e-100
Identities = 171/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 361 bits (889), Expect = e-100
Identities = 171/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 361 bits (889), Expect = e-100
Identities = 171/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 361 bits (889), Expect = e-100
Identities = 171/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 156 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 215
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 216 EALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 275
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 276 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 361 bits (889), Expect = e-100
Identities = 171/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 186 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 245
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 246 EALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 305
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 306 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 361 bits (889), Expect = e-100
Identities = 171/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EALFQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EALFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 361 bits (887), Expect = e-100
Identities = 170/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 361 bits (887), Expect = e-100
Identities = 170/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 361 bits (887), Expect = e-100
Identities = 170/177 (96%), Positives = 175/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 355 bits (872), Expect = 3e-98
Identities = 169/177 (95%), Positives = 174/177 (98%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
SFTTTAEREIVRDIKEKL YVALDFEQEMATAASSSSLEKSYELPDGQVIT+GNERFRCP
Sbjct: 200 SFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSYELPDGQVITVGNERFRCP 259
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
EA+FQPSFLGME+ GIHET+YNSIMKCD+DIRKDLYANTVLSGGTTMYPGIADRMQKEIT
Sbjct: 260 EAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 319
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
ALAP TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 320 ALAP-TMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 340 bits (836), Expect = 7e-94
Identities = 161/177 (90%), Positives = 167/177 (94%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
+FTTTAEREIVRDIKEKL YVA DFE E+A AASSSSLEKSYELPDGQVITIGNERFRCP
Sbjct: 199 TFTTTAEREIVRDIKEKLCYVAHDFESELAAAASSSSLEKSYELPDGQVITIGNERFRCP 258
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
E LFQP+F+GME GIHETTY SIMKCDVDIRKDLYANTVLSGGT+M+PGIADRMQKEI
Sbjct: 259 EVLFQPAFIGMEGAGIHETTYQSIMKCDVDIRKDLYANTVLSGGTSMFPGIADRMQKEIQ 318
Query: 451 ALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 319 HLAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 169 bits (410), Expect = 3e-42
Identities = 83/176 (47%), Positives = 114/176 (64%)
Frame = -3
Query: 808 FTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCPE 629
F + E EIVR++KE Y+ALD T ++S++ SY LPD I I N FR PE
Sbjct: 204 FHRSNEFEIVREMKENACYLALD-----PTKVENNSVKSSYALPDTTKIEISNSLFRAPE 258
Query: 628 ALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA 449
LF+P +G E G+ SIMKCDVD+R+ LY+N VLSGGTT++ G DR+ E+
Sbjct: 259 VLFKPDLIGTEWPGMAHVVNQSIMKCDVDLRQTLYSNIVLSGGTTLFKGFGDRLLGEMRK 318
Query: 448 LAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 281
+AP+ KI+I A ER WIGGSI+ASL TF++MW+ K+EY++ G S +H++ F
Sbjct: 319 IAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLGKKEYEDMGASAMHKRFF 374
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 159 bits (386), Expect = 2e-39
Identities = 81/181 (44%), Positives = 111/181 (61%), Gaps = 13/181 (7%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSSSLEKSYELPDGQVITIGNERFRCP 632
+F +A+ E VR +KEKL Y+A D EQE A ++ L + Y LPDG+VI +G ERF P
Sbjct: 203 NFNHSADFETVRQMKEKLCYIAYDVEQEERLALETTVLSQQYTLPDGRVIRLGGERFEAP 262
Query: 631 EALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT 452
E LFQP + +E G+ E + I D+D R D Y + VLSGGTTMYPG+ R++KE+
Sbjct: 263 EILFQPHLINVEKAGLSELLFGCIQASDIDTRLDFYKHIVLSGGTTMYPGLPSRLEKELK 322
Query: 451 AL-----------APSTMKIKIIAPPERKYSVWIGGSILASL--STFQQMWISKQEYDES 311
L A KI+I APP RK+ V++GG++LA+L Q W+SK+EY+E
Sbjct: 323 QLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLANLMKDRDQDFWVSKKEYEEG 382
Query: 310 G 308
G
Sbjct: 383 G 383
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 120 bits (290), Expect = 9e-28
Identities = 60/143 (41%), Positives = 81/143 (56%), Gaps = 8/143 (5%)
Frame = -3
Query: 688 YELPDGQVITIGNERFRCPEALFQPSFLGMEA-----CGIHETTYNSIMKCDVDIRKDLY 524
Y P+G G ER + PE LF +L E + + S D+DIR L+
Sbjct: 293 YAFPNGYTKEFGAERIKLPECLFDLGYLKAEGKKDGLMTVAQMAAASANLADIDIRPTLF 352
Query: 523 ANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLST 353
+N ++GG ++ G +R+ + P T+K+++ A P ERKY WIGGSIL SL T
Sbjct: 353 SNVTVTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGT 412
Query: 352 FQQMWISKQEYDESGPSIVHRKC 284
FQQMW+SK EYDESG SIV +KC
Sbjct: 413 FQQMWVSKAEYDESGKSIVEKKC 435
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 108 bits (259), Expect = 5e-24
Identities = 54/166 (32%), Positives = 97/166 (58%), Gaps = 3/166 (1%)
Frame = -3
Query: 811 SFTTTAEREIVRDIKEKLXYVALDFEQEMATAASSS--SLEKSYELPDGQV-ITIGNERF 641
+F + E+ I+R E+ YV D+++E + + SL+ P Q I N RF
Sbjct: 374 AFQSPVEKLILRFALEQTTYVPEDYQKEEKSENKETRISLDAFTPSPGMQTRFDIDNSRF 433
Query: 640 RCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 461
C E LF+P G++ G+H+ + +I++C +D R+ LY N L+GG ++ PGIA+++++
Sbjct: 434 LCTEGLFKPKKWGLDTKGLHQLIHEAILQCPIDSRRTLYRNIYLAGGASLMPGIAEKLEQ 493
Query: 460 EITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQE 323
E++ + P+T+ ++ P R + ++G I+AS STF+ IS Q+
Sbjct: 494 ELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTFEDSCISLQQ 539
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 95.5 bits (227), Expect = 4e-20
Identities = 61/186 (32%), Positives = 96/186 (51%), Gaps = 23/186 (12%)
Frame = -3
Query: 787 EIVRDIKEKLXYVALDFEQEMATA-ASSSSLEKSYELPDGQV-----ITIGNERFRCPEA 626
E+ + IKEK YV D +E ++ ++Y+ + + +G ERF PE
Sbjct: 229 EVAKMIKEKFCYVCPDVMKEFVKYDTDAAKWLRTYDGINSITKKPFNVDVGYERFLGPEI 288
Query: 625 LFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA 449
F P F E I +T I +C +D+R+ LY N VLSGG+TM+ A ++Q+++
Sbjct: 289 FFHPEFCNPEFTTPISDTIDTLIQQCPIDVRRGLYENIVLSGGSTMFKDFARKLQRDVKR 348
Query: 448 LA----------------PSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYD 317
L+ P + +++I+ ++Y+VW GGS+LAS S F Q+ +K EY
Sbjct: 349 LSDGRLQMSETLSGGRLKPKPIDVQVISHKMQRYAVWFGGSMLASTSEFYQVSHTKAEYM 408
Query: 316 ESGPSI 299
E GPSI
Sbjct: 409 ERGPSI 414
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 77.0 bits (181), Expect = 2e-14
Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 25/198 (12%)
Frame = -3
Query: 793 EREIVRDIKEKLXYVALDFEQEMATAAS---SSSLEKSYELPD------GQV-------- 665
E ++ + KE L +V+ +F++ M A + ++ K Y +PD G V
Sbjct: 198 ETYVINECKEDLCFVSQNFDESMKEARNRFQENTTMKRYIMPDFHSTFRGVVKDVKEPHD 257
Query: 664 -----ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 500
I +G ERF PE LF PS + ++ CG+ E SI +C +R L N ++ GG
Sbjct: 258 PQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGG 317
Query: 499 TTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSILASLSTFQQMWISK 329
++ +PG +R+++E+ ++ P+ + + + P+ W G L L+ + WI++
Sbjct: 318 SSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPWINR 373
Query: 328 QEYDESGPSIVHRKCF*T 275
+++DE G S+ F T
Sbjct: 374 KDWDERGDSLEFSNFFQT 391
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 77.0 bits (181), Expect = 2e-14
Identities = 54/198 (27%), Positives = 98/198 (49%), Gaps = 25/198 (12%)
Frame = -3
Query: 793 EREIVRDIKEKLXYVALDFEQEMATAAS---SSSLEKSYELPD------GQV-------- 665
E ++ + KE L +V+ +F++ M A + ++ K Y +PD G V
Sbjct: 198 ETYVINECKEDLCFVSQNFDESMKEARNRFQGNTTMKRYIMPDFHSTFRGVVKDVKEPHD 257
Query: 664 -----ITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 500
I +G ERF PE LF PS + ++ CG+ E SI +C +R L N ++ GG
Sbjct: 258 PQIPSIHLGVERFAIPEILFNPSDIDIDQCGVAEAVIESICQCPEALRPALAENIIVIGG 317
Query: 499 TTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSILASLSTFQQMWISK 329
++ +PG +R+++E+ ++ P+ + + + P+ W G L L+ + WI++
Sbjct: 318 SSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVPWINR 373
Query: 328 QEYDESGPSIVHRKCF*T 275
+++DE G S+ F T
Sbjct: 374 KDWDERGDSLEFSNFFQT 391
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 10/91 (10%)
Frame = -3
Query: 562 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK 398
+ KC +D+RK L+ N +L+GG + PG+ R+++EI + + KI +I E K
Sbjct: 198 VSKCPIDLRKKLFPNILLTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIK 257
Query: 397 ----YSVWIGGSILASL-STFQQMWISKQEY 320
+ W+G S+L SL T ++ ++ +E+
Sbjct: 258 NTPLFVSWLGASLLGSLRETIERKSLTLEEW 288
>U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform b protein.
Length = 144
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 386 PYGVLPLWRSNDLNLHCRWGESCD 457
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform c protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 386 PYGVLPLWRSNDLNLHCRWGESCD 457
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform a protein.
Length = 536
Score = 31.5 bits (68), Expect = 0.74
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +2
Query: 386 PYGVLPLWRSNDLNLHCRWGESCD 457
P VLPL NDL+ +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305
>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
protein Y53C10A.9 protein.
Length = 1564
Score = 29.5 bits (63), Expect = 3.0
Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Frame = +2
Query: 533 LTDVHVALHDGVICGLVDAASFHTQERGLEESLWATESFVSDGDDLTVGKFVRLLEGAAG 712
+T +H A V+ G +DA + + R E + + D+LTV + +RL+ G
Sbjct: 497 ITGMHQATEGKVMIGGIDANANRAEAR---ELIGYCPQYNPIYDELTVWEHLRLVNALKG 553
Query: 713 CSGG-HLLLEVKSDVXQL-LLDVTNDFP--LGGGSER 811
SGG ++ +S + Q+ L D N L GG +R
Sbjct: 554 RSGGSDFKMDAESLLKQIELTDKRNTLAKNLSGGMKR 590
>AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical
protein C10E2.2 protein.
Length = 501
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -1
Query: 720 PLHPAAPSRSLTNFPTVRSSPSE 652
PLHPA P L N P SSP+E
Sbjct: 148 PLHPAHPLLPLRNMPYDSSSPTE 170
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 222 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 314
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>U28741-1|AAA68325.2| 256|Caenorhabditis elegans Hypothetical
protein F35D2.3 protein.
Length = 256
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = -3
Query: 325 EYDESGPSIVHRKCF*THRASLPPAARGRLLNSG 224
+Y ++G SIV+ KC T R P R R LN G
Sbjct: 30 DYCKNGGSIVNGKCECTLRYEGPQCERERCLNGG 63
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +3
Query: 222 KPELSSRPRAAGGSDARCV*KHFLCTMEGPD 314
+P + R A GG DA+C+ K + C E PD
Sbjct: 3624 EPNCTERQFACGGDDAKCIPKLWYCDGE-PD 3653
>AL032654-9|CAA21720.1| 404|Caenorhabditis elegans Hypothetical
protein Y52B11A.9 protein.
Length = 404
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = -3
Query: 406 ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THRASLPPAAR 245
+RK V G A +S F + K++ DE GPS RK S PAA+
Sbjct: 213 DRKLDVK-SGVASAKISIFDMPKVKKEDPDEPGPSQPSRKSGKKRSRSRSPAAK 265
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,304,392
Number of Sequences: 27780
Number of extensions: 392285
Number of successful extensions: 1231
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1222
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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