Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13n01
         (821 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces pomb...    28   1.4  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    25   9.8  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.8  
SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|...    25   9.8  

>SPCC306.05c |ins1||INSIG domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 281

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 338 ISFNCKVCV*IGFHFMYTYM 279
           I+F CK+CV  G  F++TY+
Sbjct: 91  ITFFCKLCVIFGLGFVFTYL 110


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +1

Query: 133 WNSYSFNLVAYTFEVCKNLSTVKLHITNLKRSHNI*FSWLVI 258
           W  Y F+ V Y   +  ++   K + + L+ S  + F W ++
Sbjct: 154 WAYYGFSFVGYFIALAHSVVLHKKYASRLETSARLGFLWSIV 195


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 17/72 (23%), Positives = 28/72 (38%)
 Frame = -2

Query: 271 YNYK**LTN*TIYCVISLNL*CVILLWTNFYKLQMYRLLXXXXXXXXXXNEVLVKMNSCF 92
           + Y+  L   TI CV  + L C+IL +   +      +L            ++  +  CF
Sbjct: 498 FRYRLDLRPLTIRCVPYILLACLILFFMTLFSRSSSTILPPSILLILTFLGIVASLYYCF 557

Query: 91  RHKLNCLEIHRL 56
            H L  +   RL
Sbjct: 558 AHGLQFINWPRL 569


>SPBC19C2.06c |mug124||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 145

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 810 SXVISYNKLVITSIHSIPYEIPAHL 736
           S V   N +   SIHSIP+ I  HL
Sbjct: 25  SLVYLVNFISCPSIHSIPFHISTHL 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,727
Number of Sequences: 5004
Number of extensions: 64071
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)