Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m23
(709 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 35 9e-04
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 35 9e-04
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot... 26 0.30
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 2.1
AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic ac... 23 2.8
AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein ... 23 3.7
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.6
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 22 6.6
AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein. 22 6.6
U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive o... 21 8.7
DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like recept... 21 8.7
DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein p... 21 8.7
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 21 8.7
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 34.7 bits (76), Expect = 9e-04
Identities = 27/107 (25%), Positives = 49/107 (45%)
Frame = -2
Query: 609 KSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAAL 430
K F+ GG A+ + +T + P + + L V + K + +++R K +
Sbjct: 12 KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQIS--------------EEQRYKGMI 57
Query: 429 AREVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELL 289
+ VR+ ++ G L Y+RG A++ Y P AL +A Y+ L
Sbjct: 58 --DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFL 102
Score = 24.2 bits (50), Expect = 1.2
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = -2
Query: 411 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDEL--LKISPVWVSHLLIQCVAX 238
++++ G G YRG+ S+ + A ++ Y + L K +P +S + Q V
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224
Query: 237 XXXXXXXXXXTNPLDIVRARLQVE 166
P D VR R+ ++
Sbjct: 225 VAGIVSY-----PFDTVRRRMMMQ 243
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 34.7 bits (76), Expect = 9e-04
Identities = 27/107 (25%), Positives = 49/107 (45%)
Frame = -2
Query: 609 KSFIGGGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAAL 430
K F+ GG A+ + +T + P + + L V + K + +++R K +
Sbjct: 12 KDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQIS--------------EEQRYKGMI 57
Query: 429 AREVAVRVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDELL 289
+ VR+ ++ G L Y+RG A++ Y P AL +A Y+ L
Sbjct: 58 --DCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFL 102
Score = 24.2 bits (50), Expect = 1.2
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Frame = -2
Query: 411 RVYRQHGPLGYYRGYTASLAAYVPNSALWWALYTAYQDEL--LKISPVWVSHLLIQCVAX 238
++++ G G YRG+ S+ + A ++ Y + L K +P +S + Q V
Sbjct: 165 KIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTPFLISWGIAQVVTT 224
Query: 237 XXXXXXXXXXTNPLDIVRARLQVE 166
P D VR R+ ++
Sbjct: 225 VAGIVSY-----PFDTVRRRMMMQ 243
>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
protein.
Length = 1010
Score = 26.2 bits (55), Expect = 0.30
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 594 GGCASIVGQTIIVPFDVLSQHLMVLGLVKGRTGGVSTTINPLGIDLDKRRSKAALA 427
GG SI Q V ++S++ + + G +S PLG LD+ S AL+
Sbjct: 932 GGWQSIYAQPQTVQDQIVSEYYQNKPISEVIGGAISLDGKPLGFPLDRPLSLGALS 987
Score = 21.4 bits (43), Expect = 8.7
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -1
Query: 376 QGLHGVPGGLRAQLGAVVGSVHGVPG 299
QG+ GV G Q V V GVPG
Sbjct: 851 QGVQGVQGVQGVQGVQGVQGVQGVPG 876
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 23.4 bits (48), Expect = 2.1
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -1
Query: 172 GGRRRHDEAGVQAALGGGRSVRAVRKGPVREAGAVGV 62
GGRR + E +QAAL R +++ + G R A G+
Sbjct: 586 GGRRAYTEEELQAAL---RDIQSGKLGTRRAAVIYGI 619
>AY569781-1|AAS75781.1| 461|Apis mellifera neuronal nicotinic
acetylcholine Apisa7-2 subunit protein.
Length = 461
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 364 GVPGGLRAQLGAVVGSVH 311
G GGL AQ V+G VH
Sbjct: 381 GKEGGLEAQWSRVLGRVH 398
>AJ276511-1|CAC06383.1| 352|Apis mellifera Antennapedia protein
protein.
Length = 352
Score = 22.6 bits (46), Expect = 3.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +1
Query: 169 HLQSRPHNVQGIGQYRCGEASKSAGH 246
H Q + G+G YR S GH
Sbjct: 96 HQQDHGSGMDGMGGYRSASPSPGMGH 121
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 162 RLPPAISPSQCP 197
R PPA S S+CP
Sbjct: 470 RSPPAFSHSRCP 481
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 21.8 bits (44), Expect = 6.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 162 RLPPAISPSQCP 197
R PPA S S+CP
Sbjct: 470 RSPPAFSHSRCP 481
>AB183889-1|BAD86829.1| 316|Apis mellifera Mos protein.
Length = 316
Score = 21.8 bits (44), Expect = 6.6
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = -2
Query: 159 GTMKQVFKQLWAE 121
GT K ++KQ+W++
Sbjct: 283 GTYKTLYKQMWSQ 295
>U70841-1|AAC47455.1| 377|Apis mellifera ultraviolet sensitive
opsin protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 563 IVCPTMEAHPPPMNDFHFGL 622
+V P A P P FH GL
Sbjct: 41 LVRPHWRAFPAPGKHFHIGL 60
>DQ869051-1|ABJ09598.1| 581|Apis mellifera pyrokinin-like receptor
2 protein.
Length = 581
Score = 21.4 bits (43), Expect = 8.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -2
Query: 555 PFDVLSQHLMVLGLVKGRTGGVSTTINPL 469
P DVL +L + G +STT+NPL
Sbjct: 318 PEDVLIIIYTILTYMSGVFYYLSTTVNPL 346
>DQ257415-1|ABB81846.1| 430|Apis mellifera yellow-like protein
protein.
Length = 430
Score = 21.4 bits (43), Expect = 8.7
Identities = 6/9 (66%), Positives = 8/9 (88%)
Frame = -2
Query: 129 WAEEGLFGL 103
W EEG+FG+
Sbjct: 253 WGEEGIFGM 261
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 8.7
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 563 IVCPTMEAHPPPMNDFHFGL 622
+V P A P P FH GL
Sbjct: 41 LVHPHWRAFPAPGKHFHIGL 60
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,272
Number of Sequences: 438
Number of extensions: 4426
Number of successful extensions: 21
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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