Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13m16
(799 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c... 142 5e-35
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 30 0.44
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 27 3.1
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 27 3.1
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.1
SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.4
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 26 7.2
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 25 9.5
>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
1|||Manual
Length = 513
Score = 142 bits (344), Expect = 5e-35
Identities = 79/232 (34%), Positives = 126/232 (54%), Gaps = 3/232 (1%)
Frame = -2
Query: 783 KGVTFDSGSLDLKSPKDLRYMKGDMAGAGCILAITRTAARLKLPINIRGILPLCELMPNG 604
KGVTFDSG + +K ++++ M+ DM GA +L+ +L +P+N + PL E +P+G
Sbjct: 280 KGVTFDSGGISIKPSQNMKEMRADMGGAAVMLSSIYALEQLSIPVNAVFVTPLTENLPSG 339
Query: 603 NSPKFGDVAYSANGKSLHIRLPSREGRLLIADSLVY-ARNYWPKLIIDIGTMSKELIYTL 427
++ K GDV + NG S+ I EGRL++AD++ Y + Y K +I+ T++ ++ L
Sbjct: 340 SAAKPGDVIFMRNGLSVEIDNTDAEGRLILADAVHYVSSQYKTKAVIEASTLTGAMLVAL 399
Query: 426 DGSACGCYTNSDELFCYLQSASSQTGDRIWRMPLWKFYEDRVRDCHTADVANTGRDEFGD 247
G + +EL+ L++AS GD WRMP + Y ++ AD+ N R G
Sbjct: 400 GNVFTGAFVQGEELWKNLETASHDAGDLFWRMPFHEAYLKQLTSSSNADLCNVSR-AGGG 458
Query: 246 SPNCAAFLKQFIC--DTKWVHLDTYNIAYSKGRDFPYLRRGMTGRPTRTILE 97
AAF+K F+ D + HLD + + + GM+GRP RTI+E
Sbjct: 459 CCTAAAFIKCFLAQKDLSFAHLDIAGVMDKQLNSWDC--DGMSGRPVRTIIE 508
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/43 (34%), Positives = 27/43 (62%)
Frame = -2
Query: 633 LPLCELMPNGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADS 505
LPL +L+P N D+++S+NG ++I ++G +LI D+
Sbjct: 219 LPLYKLLPKENHSGVTDISWSSNG--MYIAASFKKGGILIWDT 259
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +1
Query: 85 LKYEFENGSCWTTGHAAAKIWEIASFG 165
L+Y + SCWTTG I+E+ S G
Sbjct: 396 LQYGNADCSCWTTGCGEFDIFEVLSTG 422
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -2
Query: 438 IYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMP 328
I TL S Y S Y+ A ++TGD+IW++P
Sbjct: 239 IRTLSFSYDSRYLASGSEDRYVDIADTKTGDQIWKIP 275
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -2
Query: 489 NYWPKLIIDIGTMSKELIYTLDGSACGCYTNSD 391
N P + +GT+ + L Y L+G+ CYT +D
Sbjct: 93 NDLPAFFVQLGTVRRLLEYNLEGA---CYTQND 122
>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 312
Score = 26.2 bits (55), Expect = 5.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +2
Query: 506 LSAMRSRPSRDGNLMCKDF--PLALYATSPNLG 598
L M P RDGNL +F P + +ATS N+G
Sbjct: 34 LDGMSIMPQRDGNLQIPNFVKPKSTFATS-NIG 65
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 509 SAMRSRPSRDGNLMCKDFPLALYATSPNLGLFPFGINSHN 628
SA S PS +G + D P +T+PNL ++S N
Sbjct: 608 SAASSTPSYNGERIVPDVPSPCISTNPNLPALVGSLDSVN 647
>SPBC32F12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Frame = -3
Query: 419 VLAVVTPIAMNCFATFNQRVVRPVIGF-------GECHYGNFTKIE 303
+L V + ++ F T R+VRP++ F G GNFTK+E
Sbjct: 252 ILLSVAHVFLDAFTTKILRIVRPILLFPLAGKFLGRFIPGNFTKLE 297
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 25.4 bits (53), Expect = 9.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -2
Query: 441 LIYTLDGSACGCYTNSDELFCYLQSASSQTGDRIWRMPLWKFYEDRVRDC 292
LI G A +SDEL+C + + S D + R P+ + Y ++ C
Sbjct: 146 LISLFSGLANILQIDSDELYCVWKISISSIQDAMHRFPVSECYLACLKAC 195
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,533,559
Number of Sequences: 5004
Number of extensions: 77347
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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