Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m16
         (799 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine aminope...    58   6e-09
Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z71186-3|CAA94914.1|  222|Caenorhabditis elegans Hypothetical pr...    28   6.7  
U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical pr...    28   8.9  

>L15313-6|AAA28198.1|  491|Caenorhabditis elegans Leucine
           aminopeptidase protein 1 protein.
          Length = 491

 Score = 58.4 bits (135), Expect = 6e-09
 Identities = 55/209 (26%), Positives = 89/209 (42%), Gaps = 9/209 (4%)
 Frame = -2

Query: 783 KGVTFDSGSLDLKSPKDLRYMKGDMAGAGCILAITRTAARLKLPINIRGILPLCE--LMP 610
           KGV +D+G L +K+   +  MK DM GA  +L       +      +   L + E  + P
Sbjct: 252 KGVVYDTGGLQIKTKTGMPNMKRDMGGAAGMLEAYSALVKHGFSQTLHACLCIVENNVSP 311

Query: 609 NGNSPKFGDVAYSANGKSLHIRLPSREGRLLIADSLVYAR-NYWPKLIIDIGTMSKELIY 433
             N P   D+    +GK++ I     EGRL++AD + YA+       I D+ T++    +
Sbjct: 312 IANKP--DDIIKMLSGKTVEINNTDAEGRLILADGVFYAKETLKATTIFDMATLTGAQAW 369

Query: 432 TLDGSACG-CYTNSDELFCYLQSASSQTGDRIWRMPLWK--FYEDRVRDCHTADVANTGR 262
            L G   G   TN ++L   +  A   +GD +  M      F+ D          +N G+
Sbjct: 370 -LSGRLHGAAMTNDEQLENEIIKAGKASGDLVAPMLFAPDLFFGDLKSSIADMKNSNLGK 428

Query: 261 DEFGDSPNCAAFLKQFIC---DTKWVHLD 184
            +   S     F+   I      +W+HLD
Sbjct: 429 MDGPPSAVAGLFIGAHIGFGEGLRWLHLD 457


>Z78018-4|CAB01448.1|  522|Caenorhabditis elegans Hypothetical
           protein W07G4.4 protein.
          Length = 522

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 2/100 (2%)
 Frame = -2

Query: 783 KGVTFDSGSLDLKSPKDLRYMKGDMAGAGCILAITRTAARLKLPINIRGILPLCELMPNG 604
           KGVT D+G  DLK+   +  M  D  G+  +    +    LK P NI+ +  +C +  + 
Sbjct: 271 KGVTIDTGGCDLKTGGHMFGMCRDKYGSAVVGGFFKAIDVLK-PKNIKAVGYMCMVRNSI 329

Query: 603 NSPKF--GDVAYSANGKSLHIRLPSREGRLLIADSLVYAR 490
            S  +   +V  S +GK +HI     EGRL + D L  A+
Sbjct: 330 GSHAYTCDEVITSRSGKRIHIYNTDAEGRLTMLDPLTLAK 369


>Z71186-3|CAA94914.1|  222|Caenorhabditis elegans Hypothetical
           protein F23D12.4 protein.
          Length = 222

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 474 LIIDIGTMSKELIYTLDGSACGCYTNSDELF-CYLQSASSQTGDRIWRMP 328
           +I+DI  +   L   +D  A     NSDE+F C +   S  +  +IW  P
Sbjct: 162 VILDIINLVNHLKIKMDTLAVAGKNNSDEVFKCIIDEVSRVSSLQIWGFP 211


>U00040-5|AAA50666.1|  934|Caenorhabditis elegans Hypothetical
           protein C18H2.4 protein.
          Length = 934

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 300 LLDLRKISIMAFAKSYHRSDYSLIEGSKTIH 392
           L+ + + S +AF +SYH+S +  IE SK +H
Sbjct: 322 LMKILEESWIAFERSYHQSKHVGIELSKLVH 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,269,640
Number of Sequences: 27780
Number of extensions: 424220
Number of successful extensions: 913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)