Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13m15
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    30   2.6  
04_04_0069 + 22506885-22508354                                         30   2.6  
05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713     29   4.5  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 29   6.0  
11_01_0026 + 193383-194566,195726-195972,196099-198063                 29   6.0  
03_01_0056 - 471338-471919,472013-472213                               28   7.9  

>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -3

Query: 571  NQQQGAKPKSNKPVGTTIETTTNESQA*TS--RGRYVWHIIYVVHVDSSCVTLHLN 410
            ++Q+ A+ K+ K VG +  TT+ + +  +S  R   +    +++H+  SCV++HL+
Sbjct: 839  HEQKIAQNKNGKWVGVSSSTTSEDLEESSSSIRRELLRSTEFLLHIKLSCVSVHLS 894


>04_04_0069 + 22506885-22508354
          Length = 489

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
 Frame = -2

Query: 716 GRPWGRSWPNE*RRV---------PPSASAQFPAGAGRTKSGSAPKWPG 597
           GRP GR    E RR+         P SA+ +  AG+G + +GS P W G
Sbjct: 24  GRPQGRRQRGEERRIRRRHHRIRRPASATRRVAAGSGVSAAGSEPWWCG 72


>05_05_0215 - 23352363-23352666,23353183-23353495,23353590-23353713
          Length = 246

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 713 RPWGRSWPNE*RRVPPSASAQFPAGAGRTKSGSAPKWPGWR 591
           R WG++W +       S S Q  A  GRT + +    PGW+
Sbjct: 196 RNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQ 236


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 607 FGAEPDFVLPAPAGNCADALGGTLLYSLGQDLPHGRPPRKIGDG 738
           F A  D  +P+PAGN A A G      + + L  GR P  +G G
Sbjct: 201 FAAADDADVPSPAGNLAGA-GEENCRRIAEILSRGRNPMLVGVG 243


>11_01_0026 + 193383-194566,195726-195972,196099-198063
          Length = 1131

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +1

Query: 607 FGAEPDFVLPAPAGNCADALGGTLLYSLGQDLPHGRPPRKIGDG 738
           F A  D  +P+PAGN A A G      + + L  GR P  +G G
Sbjct: 202 FAAADDADVPSPAGNLAGA-GEENCRRIAEILSRGRNPMLVGVG 244


>03_01_0056 - 471338-471919,472013-472213
          Length = 260

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 644 LEIARTHSAEPSSIHWARTSPTGVHRXKLATEKTALRW 757
           L+IA   +A P+S      SP+G      A +K A+RW
Sbjct: 199 LKIAGCEAAAPASCQPVPASPSGATGELSAQQKAAMRW 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,573,849
Number of Sequences: 37544
Number of extensions: 470951
Number of successful extensions: 1071
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)